3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 6.223

Ascend tree (bring in more domains)

Classes% of representative set
Peptides 92.86
All alpha 7.14
Breakdown into folds% of cluster % of class
Peptides
Alzheimer's disease amyloid peptides from 3Dee 7.14 2.04
Simple Helix from 3Dee 7.14 2.04
Simple helix from 3Dee 64.29 18.37
Transmembrane helical fragments from 3Dee 14.29 4.08
All alpha
Oligomers of long helices from 3Dee 7.14 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1hup-1 [seq. related domains] All alpha Oligomers of long helices
1odr-1 [seq. related domains] Peptides Simple helix
1pei-1 [seq. related domains] Peptides Simple helix
1zec-1 [seq. related domains] Peptides Simple helix
1cdlg-1 [seq. related domains] Peptides Simple helix
3mra-1 [seq. related domains] Peptides Simple helix
1a11-1 [seq. related domains] Peptides Simple helix
2mag-1 [seq. related domains] Peptides Simple helix
2nr1-1 [seq. related domains] Peptides Simple helix
1etgb-1 [seq. related domains] Peptides Simple helix
1btr-1 [seq. related domains] Peptides Transmembrane helical fragments
1btt-1 [seq. related domains] Peptides Transmembrane helical fragments

Cluster 2

Descend tree into cluster 2

1amc-1 [seq. related domains] Peptides Alzheimer's disease amyloid peptides
2dtb-1 [seq. related domains] Peptides Simple Helix

View superpositions of "checked" domains

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