3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 4.750

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Classes% of representative set
undefined 16.67
Peptides 79.17
All alpha 4.17
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 16.67 0.63
Peptides
Alzheimer's disease amyloid peptides from 3Dee 4.17 2.04
Glucagon from 3Dee 4.17 2.04
Mellitin from 3Dee 4.17 2.04
Phospholamban, cytoplasmic domain residues 1-25 from 3Dee 4.17 2.04
Simple Helix from 3Dee 4.17 2.04
Simple helix from 3Dee 45.83 22.45
Transmembrane helical fragments from 3Dee 8.33 4.08
Vacuolar targeting peptide from NA-PROPI (residues 29-54) from 3Dee 4.17 2.04
All alpha
Oligomers of long helices from 3Dee 4.17 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1amc-1 [seq. related domains] Peptides Alzheimer's disease amyloid peptides
1gcn-1 [seq. related domains] Peptides Glucagon
1hup-1 [seq. related domains] All alpha Oligomers of long helices
2dtb-1 [seq. related domains] Peptides Simple Helix
2nr1-1 [seq. related domains] Peptides Simple helix
1odr-1 [seq. related domains] Peptides Simple helix
1pei-1 [seq. related domains] Peptides Simple helix
1zec-1 [seq. related domains] Peptides Simple helix
1cdlg-1 [seq. related domains] Peptides Simple helix
2bbnb-1 [seq. related domains] Peptides Simple helix
3mra-1 [seq. related domains] Peptides Simple helix
1oeg-1 [seq. related domains] Peptides Simple helix
1a11-1 [seq. related domains] Peptides Simple helix
2mag-1 [seq. related domains] Peptides Simple helix
1etgb-1 [seq. related domains] Peptides Simple helix
1btt-1 [seq. related domains] Peptides Transmembrane helical fragments
1btr-1 [seq. related domains] Peptides Transmembrane helical fragments
1jswc-3 [seq. related domains] undefined undefined
1novd-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

2mltb-1 [seq. related domains] Peptides Mellitin
1plp-1 [seq. related domains] Peptides Phospholamban, cytoplasmic domain residues 1-25
1vtp-1 [seq. related domains] Peptides Vacuolar targeting peptide from NA-PROPI (residues 29-54)
1loi-1 [seq. related domains] undefined undefined
1dsk-1 [seq. related domains] undefined undefined

View superpositions of "checked" domains


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3dee@compbio.dundee.ac.uk