3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 4.485

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Classes% of representative set
undefined 11.76
Peptides 79.41
All alpha 8.82
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 11.76 0.63
Peptides
Alzheimer's disease amyloid peptides from 3Dee 2.94 2.04
Antifreeze polypeptide HPLC-6 from 3Dee 17.65 12.24
Glucagon from 3Dee 2.94 2.04
Liposaccharide-binding protein CAP18 (residues 106-137) from 3Dee 2.94 2.04
Mellitin from 3Dee 5.88 4.08
Phospholamban, cytoplasmic domain residues 1-25 from 3Dee 2.94 2.04
Simple Helix from 3Dee 2.94 2.04
Simple helix from 3Dee 32.35 22.45
Transmembrane helical fragments from 3Dee 5.88 4.08
Vacuolar targeting peptide from NA-PROPI (residues 29-54) from 3Dee 2.94 2.04
All alpha
Oligomers of long helices from 3Dee 8.82 1.48

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1amc-1 [seq. related domains] Peptides Alzheimer's disease amyloid peptides
1gcn-1 [seq. related domains] Peptides Glucagon
2mltb-1 [seq. related domains] Peptides Mellitin
1hup-1 [seq. related domains] All alpha Oligomers of long helices
1plp-1 [seq. related domains] Peptides Phospholamban, cytoplasmic domain residues 1-25
2dtb-1 [seq. related domains] Peptides Simple Helix
2nr1-1 [seq. related domains] Peptides Simple helix
1odr-1 [seq. related domains] Peptides Simple helix
1pei-1 [seq. related domains] Peptides Simple helix
1zec-1 [seq. related domains] Peptides Simple helix
1cdlg-1 [seq. related domains] Peptides Simple helix
2bbnb-1 [seq. related domains] Peptides Simple helix
3mra-1 [seq. related domains] Peptides Simple helix
1oeg-1 [seq. related domains] Peptides Simple helix
1a11-1 [seq. related domains] Peptides Simple helix
2mag-1 [seq. related domains] Peptides Simple helix
1etgb-1 [seq. related domains] Peptides Simple helix
1btr-1 [seq. related domains] Peptides Transmembrane helical fragments
1btt-1 [seq. related domains] Peptides Transmembrane helical fragments
1vtp-1 [seq. related domains] Peptides Vacuolar targeting peptide from NA-PROPI (residues 29-54)
1dsk-1 [seq. related domains] undefined undefined
1loi-1 [seq. related domains] undefined undefined
1novd-1 [seq. related domains] undefined undefined
1jswc-3 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1a2xb-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1tiic-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1coi-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1htn-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1wfbb-1 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1toh-2 [seq. related domains] Peptides Antifreeze polypeptide HPLC-6
1lyp-1 [seq. related domains] Peptides Liposaccharide-binding protein CAP18 (residues 106-137)
1gp2a-1 [seq. related domains] Peptides Mellitin
1ltic-1 [seq. related domains] All alpha Oligomers of long helices
1gcmc-1 [seq. related domains] All alpha Oligomers of long helices

View superpositions of "checked" domains

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