3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 1.553

Ascend tree (bring in more domains)

Classes% of representative set
undefined 28.57
Small proteins 35.71
Alpha and beta (a+b) 14.29
All beta 14.29
All alpha 7.14
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 28.57 0.63
Small proteins
Ligand-binding domain of low-density lipoprotein receptor from SCOP 7.14 0.87
Ovomucoid/PCI-1 like inhibitors from SCOP 7.14 0.87
Rubredoxin-like from SCOP 7.14 0.87
Zn2/Cys6 DNA-binding domain from SCOP 14.29 1.74
Alpha and beta (a+b)
Lysozyme-like Domain II from 3Dee 14.29 1.04
All beta
P-loop containing nucleotide triphosphate hydrolases small insert from 3Dee 14.29 0.89
All alpha
Pyruvate oxidase and decarboxylase, C terminal domain from 3Dee 7.14 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1ajj-1 [seq. related domains] Small proteins Ligand-binding domain of low-density lipoprotein receptor
256l-2 [seq. related domains] Alpha and beta (a+b) Lysozyme-like Domain II
1lsg-2 [seq. related domains] Alpha and beta (a+b) Lysozyme-like Domain II
1tih-1 [seq. related domains] Small proteins Ovomucoid/PCI-1 like inhibitors
1zip-2 [seq. related domains] All beta P-loop containing nucleotide triphosphate hydrolases small insert
1ankb-2 [seq. related domains] All beta P-loop containing nucleotide triphosphate hydrolases small insert
1iro-1 [seq. related domains] Small proteins Rubredoxin-like
1ryt-2 [seq. related domains] undefined undefined
2bbg-1 [seq. related domains] undefined undefined
1dar-3 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1powb-4 [seq. related domains] All alpha Pyruvate oxidase and decarboxylase, C terminal domain
1pyib-3 [seq. related domains] Small proteins Zn2/Cys6 DNA-binding domain
1ajyb-3 [seq. related domains] Small proteins Zn2/Cys6 DNA-binding domain
1fre-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


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