3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.081

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Classes% of representative set
undefined 37.50
Small proteins 31.25
Alpha and beta (a+b) 12.50
All beta 12.50
All alpha 6.25
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 37.50 0.94
Small proteins
Ligand-binding domain of low-density lipoprotein receptor from SCOP 6.25 0.87
Ovomucoid/PCI-1 like inhibitors from SCOP 6.25 0.87
Rubredoxin-like from SCOP 6.25 0.87
Zn2/Cys6 DNA-binding domain from SCOP 12.50 1.74
Alpha and beta (a+b)
Lysozyme-like Domain II from 3Dee 12.50 1.04
All beta
P-loop containing nucleotide triphosphate hydrolases small insert from 3Dee 12.50 0.89
All alpha
Pyruvate oxidase and decarboxylase, C terminal domain from 3Dee 6.25 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1ajj-1 [seq. related domains] Small proteins Ligand-binding domain of low-density lipoprotein receptor
256l-2 [seq. related domains] Alpha and beta (a+b) Lysozyme-like Domain II
1lsg-2 [seq. related domains] Alpha and beta (a+b) Lysozyme-like Domain II
1tih-1 [seq. related domains] Small proteins Ovomucoid/PCI-1 like inhibitors
1zip-2 [seq. related domains] All beta P-loop containing nucleotide triphosphate hydrolases small insert
1ankb-2 [seq. related domains] All beta P-loop containing nucleotide triphosphate hydrolases small insert
1powb-4 [seq. related domains] All alpha Pyruvate oxidase and decarboxylase, C terminal domain
1iro-1 [seq. related domains] Small proteins Rubredoxin-like
1pyib-3 [seq. related domains] Small proteins Zn2/Cys6 DNA-binding domain
1ajyb-3 [seq. related domains] Small proteins Zn2/Cys6 DNA-binding domain
2bbg-1 [seq. related domains] undefined undefined
1ryt-2 [seq. related domains] undefined undefined
1fre-1 [seq. related domains] undefined undefined
1dar-3 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1aqs-1 [seq. related domains] undefined undefined
2vgh-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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