3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.025

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Classes% of representative set
undefined 24.49
Small proteins 65.31
Alpha and beta (a+b) 4.08
All beta 4.08
All alpha 2.04
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 24.49 1.89
Small proteins
Defensin-like from SCOP 8.16 3.48
Ligand-binding domain of low-density lipoprotein receptor from SCOP 2.04 0.87
Neurotoxin III (ATX III) from SCOP 2.04 0.87
Ovomucoid/PCI-1 like inhibitors from SCOP 2.04 0.87
Rubredoxin-like from SCOP 2.04 0.87
Small inhibitors, toxins, lectins from 3Dee 42.86 18.26
Trefoil from SCOP 2.04 0.87
Zn2/Cys6 DNA-binding domain from SCOP 4.08 1.74
Alpha and beta (a+b)
Lysozyme-like Domain II from 3Dee 4.08 1.04
All beta
P-loop containing nucleotide triphosphate hydrolases small insert from 3Dee 4.08 0.89
All alpha
Pyruvate oxidase and decarboxylase, C terminal domain from 3Dee 2.04 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1ajj-1 [seq. related domains] Small proteins Ligand-binding domain of low-density lipoprotein receptor
256l-2 [seq. related domains] Alpha and beta (a+b) Lysozyme-like Domain II
1lsg-2 [seq. related domains] Alpha and beta (a+b) Lysozyme-like Domain II
1tih-1 [seq. related domains] Small proteins Ovomucoid/PCI-1 like inhibitors
1ankb-2 [seq. related domains] All beta P-loop containing nucleotide triphosphate hydrolases small insert
1zip-2 [seq. related domains] All beta P-loop containing nucleotide triphosphate hydrolases small insert
1powb-4 [seq. related domains] All alpha Pyruvate oxidase and decarboxylase, C terminal domain
1iro-1 [seq. related domains] Small proteins Rubredoxin-like
1pyib-3 [seq. related domains] Small proteins Zn2/Cys6 DNA-binding domain
1ajyb-3 [seq. related domains] Small proteins Zn2/Cys6 DNA-binding domain
1fre-1 [seq. related domains] undefined undefined
1dar-3 [seq. related domains] undefined undefined
2vgh-1 [seq. related domains] undefined undefined
1ryt-2 [seq. related domains] undefined undefined
2bbg-1 [seq. related domains] undefined undefined
1aqs-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1dfnb-1 [seq. related domains] Small proteins Defensin-like
1apf-1 [seq. related domains] Small proteins Defensin-like
1bnb-1 [seq. related domains] Small proteins Defensin-like
2bds-1 [seq. related domains] Small proteins Defensin-like
1ans-1 [seq. related domains] Small proteins Neurotoxin III (ATX III)
1agg-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1mvj-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1azk-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1bi6h-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1scy-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1ica-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1wgtb-3 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1omg-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
2cco-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
4cpai-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1ayj-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1lqq-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1chl-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1mcti-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1mmc-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1gur-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1bah-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1acw-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
2pta-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1omn-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1myn-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
2pspb-2 [seq. related domains] Small proteins Trefoil
2brz-1 [seq. related domains] undefined undefined
1qdp-1 [seq. related domains] undefined undefined
2adx-1 [seq. related domains] undefined undefined
1ztn-1 [seq. related domains] undefined undefined
1axh-1 [seq. related domains] undefined undefined
1ag7-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

3dee@compbio.dundee.ac.uk