3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 0.905

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Classes% of representative set
undefined 22.06
Small proteins 67.65
Alpha and beta (a+b) 4.41
All beta 4.41
All alpha 1.47
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 22.06 2.36
Small proteins
Ascaris trypsin inhibitor from 3Dee 1.47 0.87
Blood coagulation inhibitor (disintegrin) from SCOP 1.47 0.87
Complement control module from 3Dee 1.47 0.87
Defensin-like from SCOP 5.88 3.48
EGF-like module from 3Dee 5.88 3.48
Fibronectin type I module from SCOP 2.94 1.74
Ligand-binding domain of low-density lipoprotein receptor from SCOP 1.47 0.87
Neurotoxin III (ATX III) from SCOP 1.47 0.87
Ovomucoid/PCI-1 like inhibitors from SCOP 1.47 0.87
Proteinase inhibitor PMP-C from SCOP 1.47 0.87
Rubredoxin-like from SCOP 2.94 1.74
Small inhibitors, toxins, lectins from 3Dee 32.35 19.13
Thrombin inhibitors from 3Dee 2.94 1.74
Trefoil from SCOP 1.47 0.87
Zn2/Cys6 DNA-binding domain from SCOP 2.94 1.74
Alpha and beta (a+b)
A DNA topoisomerase I domain from 3Dee 1.47 0.52
Lysozyme-like Domain II from 3Dee 2.94 1.04
All beta
P-loop containing nucleotide triphosphate hydrolases small insert from 3Dee 2.94 0.89
Viral coat and capsid proteins from SCOP 1.47 0.45
All alpha
Pyruvate oxidase and decarboxylase, C terminal domain from 3Dee 1.47 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1apf-1 [seq. related domains] Small proteins Defensin-like
1bnb-1 [seq. related domains] Small proteins Defensin-like
1dfnb-1 [seq. related domains] Small proteins Defensin-like
2bds-1 [seq. related domains] Small proteins Defensin-like
1ajj-1 [seq. related domains] Small proteins Ligand-binding domain of low-density lipoprotein receptor
256l-2 [seq. related domains] Alpha and beta (a+b) Lysozyme-like Domain II
1lsg-2 [seq. related domains] Alpha and beta (a+b) Lysozyme-like Domain II
1ans-1 [seq. related domains] Small proteins Neurotoxin III (ATX III)
1tih-1 [seq. related domains] Small proteins Ovomucoid/PCI-1 like inhibitors
1zip-2 [seq. related domains] All beta P-loop containing nucleotide triphosphate hydrolases small insert
1ankb-2 [seq. related domains] All beta P-loop containing nucleotide triphosphate hydrolases small insert
1powb-4 [seq. related domains] All alpha Pyruvate oxidase and decarboxylase, C terminal domain
1iro-1 [seq. related domains] Small proteins Rubredoxin-like
1bi6h-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1scy-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1ica-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1wgtb-3 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1omg-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
2cco-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
4cpai-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1ayj-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1lqq-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1chl-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1mcti-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1mmc-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1gur-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1bah-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1acw-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
2pta-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1agg-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1omn-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1mvj-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1myn-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1azk-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
2pspb-2 [seq. related domains] Small proteins Trefoil
1ajyb-3 [seq. related domains] Small proteins Zn2/Cys6 DNA-binding domain
1pyib-3 [seq. related domains] Small proteins Zn2/Cys6 DNA-binding domain
2adx-1 [seq. related domains] undefined undefined
1ryt-2 [seq. related domains] undefined undefined
1ag7-1 [seq. related domains] undefined undefined
1qdp-1 [seq. related domains] undefined undefined
2brz-1 [seq. related domains] undefined undefined
2vgh-1 [seq. related domains] undefined undefined
1axh-1 [seq. related domains] undefined undefined
1ztn-1 [seq. related domains] undefined undefined
1dar-3 [seq. related domains] undefined undefined
2bbg-1 [seq. related domains] undefined undefined
1aqs-1 [seq. related domains] undefined undefined
1fre-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1yua-1 [seq. related domains] Alpha and beta (a+b) A DNA topoisomerase I domain
2ech-1 [seq. related domains] Small proteins Blood coagulation inhibitor (disintegrin)
1vve-1 [seq. related domains] Small proteins Complement control module
1zaq-1 [seq. related domains] Small proteins EGF-like module
1xdtr-1 [seq. related domains] Small proteins EGF-like module
1faxl-1 [seq. related domains] Small proteins EGF-like module
1tpg-2 [seq. related domains] Small proteins EGF-like module
1tpn-1 [seq. related domains] Small proteins Fibronectin type I module
1fbr-2 [seq. related domains] Small proteins Fibronectin type I module
1pmc-1 [seq. related domains] Small proteins Proteinase inhibitor PMP-C
1qyp-1 [seq. related domains] Small proteins Rubredoxin-like
1tabi-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1dhx-5 [seq. related domains] All beta Viral coat and capsid proteins
1pft-1 [seq. related domains] undefined undefined
1apq-1 [seq. related domains] undefined undefined
1apj-1 [seq. related domains] undefined undefined

Cluster 3

Descend tree into cluster 3

1atb-1 [seq. related domains] Small proteins Ascaris trypsin inhibitor
1hic-1 [seq. related domains] Small proteins Thrombin inhibitors
1dec-1 [seq. related domains] Small proteins Thrombin inhibitors

Enter PDB code - optionally suffixing the code with the chain id.


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