3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.381

Ascend tree (bring in more domains)

Classes% of representative set
undefined 12.50
Small proteins 62.50
Alpha and beta (a+b) 12.50
All beta 12.50
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 12.50 0.16
Small proteins
Complement control module from 3Dee 12.50 0.87
Fibronectin type I module from SCOP 25.00 1.74
Proteinase inhibitor PMP-C from SCOP 12.50 0.87
Rubredoxin-like from SCOP 12.50 0.87
Alpha and beta (a+b)
A DNA topoisomerase I domain from 3Dee 12.50 0.52
All beta
Viral coat and capsid proteins from SCOP 12.50 0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1yua-1 [seq. related domains] Alpha and beta (a+b) A DNA topoisomerase I domain
1vve-1 [seq. related domains] Small proteins Complement control module
1tpn-1 [seq. related domains] Small proteins Fibronectin type I module
1fbr-2 [seq. related domains] Small proteins Fibronectin type I module
1qyp-1 [seq. related domains] Small proteins Rubredoxin-like
1pft-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1pmc-1 [seq. related domains] Small proteins Proteinase inhibitor PMP-C
1dhx-5 [seq. related domains] All beta Viral coat and capsid proteins

Enter PDB code - optionally suffixing the code with the chain id.

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