3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.399

Ascend tree (bring in more domains)

Classes% of representative set
undefined 14.29
Small proteins 71.43
Alpha and beta (a+b) 7.14
All beta 7.14
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 14.29 0.31
Small proteins
Complement control module from 3Dee 7.14 0.87
EGF-like module from 3Dee 28.57 3.48
Fibronectin type I module from SCOP 14.29 1.74
Proteinase inhibitor PMP-C from SCOP 7.14 0.87
Rubredoxin-like from SCOP 7.14 0.87
Small inhibitors, toxins, lectins from 3Dee 7.14 0.87
Alpha and beta (a+b)
A DNA topoisomerase I domain from 3Dee 7.14 0.52
All beta
Viral coat and capsid proteins from SCOP 7.14 0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1xdtr-1 [seq. related domains] Small proteins EGF-like module
1faxl-1 [seq. related domains] Small proteins EGF-like module
1zaq-1 [seq. related domains] Small proteins EGF-like module
1tpg-2 [seq. related domains] Small proteins EGF-like module
1tabi-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1apq-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1yua-1 [seq. related domains] Alpha and beta (a+b) A DNA topoisomerase I domain
1vve-1 [seq. related domains] Small proteins Complement control module
1tpn-1 [seq. related domains] Small proteins Fibronectin type I module
1fbr-2 [seq. related domains] Small proteins Fibronectin type I module
1pmc-1 [seq. related domains] Small proteins Proteinase inhibitor PMP-C
1qyp-1 [seq. related domains] Small proteins Rubredoxin-like
1dhx-5 [seq. related domains] All beta Viral coat and capsid proteins
1pft-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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