3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 1.070

Ascend tree (bring in more domains)

Classes% of representative set
undefined 22.22
Small proteins 11.11
Alpha and beta (a+b) 11.11
All beta 55.56
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 22.22 0.31
Small proteins
Methylamine dehydrogenase, L-chain from 3Dee 11.11 0.87
Alpha and beta (a+b)
Profilin-like from SCOP 11.11 0.52
All beta
Lipocalins from SCOP 44.44 1.79
Streptavidin-like from SCOP 11.11 0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1bbpb-1 [seq. related domains] All beta Lipocalins
1ael-1 [seq. related domains] All beta Lipocalins
1aqb-1 [seq. related domains] All beta Lipocalins
1bebb-1 [seq. related domains] All beta Lipocalins
1smpi-1 [seq. related domains] All beta Streptavidin-like
2np1b-1 [seq. related domains] undefined undefined
1pbob-2 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1mdam-1 [seq. related domains] Small proteins Methylamine dehydrogenase, L-chain
2pyp-1 [seq. related domains] Alpha and beta (a+b) Profilin-like

Enter PDB code - optionally suffixing the code with the chain id.

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