3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 0.531

Ascend tree (bring in more domains)

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• Classes

• All beta folds
• Alpha and beta (a+b) folds
• Small proteins folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	50.00	1.42
Small proteins
Methylamine dehydrogenase, L-chain from 3Dee	5.56	0.87
Alpha and beta (a+b)
Profilin-like from SCOP	5.56	0.52
All beta
Lipocalins from SCOP	22.22	1.79
PH domain-like from SCOP	11.11	0.89
Streptavidin-like from SCOP	5.56	0.45

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1mph-1	[seq. related domains]	All beta	PH domain-like
2dynb-1	[seq. related domains]	All beta	PH domain-like
1awe-1	[seq. related domains]	undefined	undefined
1bak-1	[seq. related domains]	undefined	undefined
1irsa-1	[seq. related domains]	undefined	undefined
1mai-1	[seq. related domains]	undefined	undefined
1shca-1	[seq. related domains]	undefined	undefined
1x11b-1	[seq. related domains]	undefined	undefined
1btkb-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1bbpb-1	[seq. related domains]	All beta	Lipocalins
1aqb-1	[seq. related domains]	All beta	Lipocalins
1ael-1	[seq. related domains]	All beta	Lipocalins
1bebb-1	[seq. related domains]	All beta	Lipocalins
1mdam-1	[seq. related domains]	Small proteins	Methylamine dehydrogenase, L-chain
2pyp-1	[seq. related domains]	Alpha and beta (a+b)	Profilin-like
1smpi-1	[seq. related domains]	All beta	Streptavidin-like
1pbob-2	[seq. related domains]	undefined	undefined
2np1b-1	[seq. related domains]	undefined	undefined

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Enter PDB code - optionally suffixing the code with the chain id.

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