|
|
3 Dee - Database of Protein Domain Definitions |
| Classes | % of representative set |
|---|---|
| undefined | 41.53 |
| Small proteins | 3.39 |
| Alpha and beta (a+b) | 30.51 |
| All beta | 23.73 |
| All alpha | 0.85 |
| Breakdown into folds | % of cluster | % of class |
|---|---|---|
| undefined | ||
| undefined from 3Dee | 41.53 | 7.70 |
| Small proteins | ||
Antifungal protein (AGAFP) | 0.85 | 0.87 |
| Methylamine dehydrogenase, L-chain from 3Dee | 0.85 | 0.87 |
| Rubredoxin-like | 0.85 | 0.87 |
| Small inhibitors, toxins, lectins from 3Dee | 0.85 | 0.87 |
| Alpha and beta (a+b) | ||
| "histone-like" proteins from arhaea from 3Dee | 0.85 | 0.52 |
| A DNA topoisomerase I domain | 1.69 | 1.04 |
| Astacin domain II from 3Dee | 0.85 | 0.52 |
| Copper amino oxidase, domain 1 from 3Dee | 0.85 | 0.52 |
| Cystatin-like | 8.47 | 5.18 |
| Cysteine proteinases Domain I | 0.85 | 0.52 |
| FKBP-like | 1.69 | 1.04 |
| Interleukin 8-like chemokines from 3Dee | 1.69 | 1.04 |
| Microbal ribonucleases from 3Dee | 2.54 | 1.55 |
| P-loop containing nucleotide triphosphate hydrolases, inserted domain in Guanylate Kinase | 0.85 | 0.52 |
| Profilin-like | 1.69 | 1.04 |
| RNA bacteriophage capsid protein | 1.69 | 1.04 |
| Ribonuclease A-like from 3Dee | 1.69 | 1.04 |
| SH2-like | 0.85 | 0.52 |
| Virally encoded KP4 toxin from 3Dee | 0.85 | 0.52 |
| beta-Lactamase/D-ala carboxypeptidase Domain I | 0.85 | 0.52 |
| dsRBD & PDA domains | 2.54 | 1.55 |
| All beta | ||
| Barrel-sandwich hybrid | 3.39 | 1.79 |
| Lipocalins | 3.39 | 1.79 |
| Mu transposase, C-terminal domain from 3Dee | 0.85 | 0.45 |
| OB-fold | 7.63 | 4.02 |
| PH domain-like | 1.69 | 0.89 |
| SH3-like barrel | 3.39 | 1.79 |
| Streptavidin-like | 1.69 | 0.89 |
| Viral coat and capsid proteins | 0.85 | 0.45 |
| beta-Clip from 3Dee | 0.85 | 0.45 |
| All alpha | ||
| Lipoxigenase-1, A DNA topoisomerase I domain | 0.85 | 0.49 |
| 1sso-1 | [seq. related domains] | Alpha and beta (a+b) |
"histone-like" proteins from arhaea |
| 1vcc-1 | [seq. related domains] | Alpha and beta (a+b) |
A DNA topoisomerase I domain |
| 1yua-2 | [seq. related domains] | Alpha and beta (a+b) |
A DNA topoisomerase I domain |
| 1afp-1 | [seq. related domains] | Small proteins |
Antifungal protein (AGAFP) |
| 2pcfb-2 | [seq. related domains] | All beta |
Barrel-sandwich hybrid |
| 1fyc-1 | [seq. related domains] | All beta |
Barrel-sandwich hybrid |
| 1bdo-1 | [seq. related domains] | All beta |
Barrel-sandwich hybrid |
| 1iyv-1 | [seq. related domains] | All beta |
Barrel-sandwich hybrid |
| 1spub-1 | [seq. related domains] | Alpha and beta (a+b) |
Copper amino oxidase, domain 1 |
| 1a90-1 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 1udii-1 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 1std-1 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 1ksib-1 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 1dvd-1 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 1spub-2 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 1spub-3 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 4mond-1 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 1iskb-1 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 1askb-1 | [seq. related domains] | Alpha and beta (a+b) |
Cystatin-like |
| 1csbe-1 | [seq. related domains] | Alpha and beta (a+b) |
Cysteine proteinases Domain I |
| 1mi2b-1 | [seq. related domains] | Alpha and beta (a+b) |
Interleukin 8-like chemokines |
| 1sdf-1 | [seq. related domains] | Alpha and beta (a+b) |
Interleukin 8-like chemokines |
| 1yge-3 | [seq. related domains] | All alpha |
Lipoxigenase-1, A DNA topoisomerase I domain |
| 1rghb-1 | [seq. related domains] | Alpha and beta (a+b) |
Microbal ribonucleases |
| 1a2pc-1 | [seq. related domains] | Alpha and beta (a+b) |
Microbal ribonucleases |
| 5birb-1 | [seq. related domains] | Alpha and beta (a+b) |
Microbal ribonucleases |
| 1bcmb-2 | [seq. related domains] | All beta |
Mu transposase, C-terminal domain |
| 1se4-2 | [seq. related domains] | All beta |
OB-fold |
| 1bcpk-1 | [seq. related domains] | All beta |
OB-fold |
| 1mef-1 | [seq. related domains] | All beta |
OB-fold |
| 4ull-1 | [seq. related domains] | All beta |
OB-fold |
| 1aszb-1 | [seq. related domains] | All beta |
OB-fold |
| 1bcpl-1 | [seq. related domains] | All beta |
OB-fold |
| 1bcpi-2 | [seq. related domains] | All beta |
OB-fold |
| 1krt-1 | [seq. related domains] | All beta |
OB-fold |
| 1ae3-1 | [seq. related domains] | All beta |
OB-fold |
| 1hlup-1 | [seq. related domains] | Alpha and beta (a+b) |
Profilin-like |
| 1mvbc-1 | [seq. related domains] | Alpha and beta (a+b) |
RNA bacteriophage capsid protein |
| 1qbec-1 | [seq. related domains] | Alpha and beta (a+b) |
RNA bacteriophage capsid protein |
| 4rsd-1 | [seq. related domains] | Alpha and beta (a+b) |
Ribonuclease A-like |
| 1onc-1 | [seq. related domains] | Alpha and beta (a+b) |
Ribonuclease A-like |
| 1acmd-2 | [seq. related domains] | Small proteins |
Rubredoxin-like |
| 1lcka-2 | [seq. related domains] | Alpha and beta (a+b) |
SH2-like |
| 1pht-1 | [seq. related domains] | All beta |
SH3-like barrel |
| 1psf-1 | [seq. related domains] | All beta |
SH3-like barrel |
| 1nlpc-1 | [seq. related domains] | All beta |
SH3-like barrel |
| 1bib-3 | [seq. related domains] | All beta |
SH3-like barrel |
| 1swgd-1 | [seq. related domains] | All beta |
Streptavidin-like |
| 1po22-2 | [seq. related domains] | All beta |
Viral coat and capsid proteins |
| 1a5ob-1 | [seq. related domains] | All beta |
beta-Clip |
| 1tem-1 | [seq. related domains] | Alpha and beta (a+b) |
beta-Lactamase/D-ala carboxypeptidase Domain I |
| 1stu-1 | [seq. related domains] | Alpha and beta (a+b) |
dsRBD & PDA domains |
| 1pkp-1 | [seq. related domains] | Alpha and beta (a+b) |
dsRBD & PDA domains |
| 1ah5-3 | [seq. related domains] | Alpha and beta (a+b) |
dsRBD & PDA domains |
| 1ospo-2 | [seq. related domains] | undefined |
undefined |
| 1rfs-1 | [seq. related domains] | undefined |
undefined |
| 1kwab-1 | [seq. related domains] | undefined |
undefined |
| 2nef-1 | [seq. related domains] | undefined |
undefined |
| 1a63-1 | [seq. related domains] | undefined |
undefined |
| 1cuk-1 | [seq. related domains] | undefined |
undefined |
| 1klo-1 | [seq. related domains] | undefined |
undefined |
| 1aqzb-1 | [seq. related domains] | undefined |
undefined |
| 1pdr-1 | [seq. related domains] | undefined |
undefined |
| 1msi-1 | [seq. related domains] | undefined |
undefined |
| 1vif-1 | [seq. related domains] | undefined |
undefined |
| 1a0i-2 | [seq. related domains] | undefined |
undefined |
| 1jmca-1 | [seq. related domains] | undefined |
undefined |
| 1sro-1 | [seq. related domains] | undefined |
undefined |
| 1bb9-1 | [seq. related domains] | undefined |
undefined |
| 1auub-1 | [seq. related domains] | undefined |
undefined |
| 1lt6p-1 | [seq. related domains] | undefined |
undefined |
| 1ahjh-3 | [seq. related domains] | undefined |
undefined |
| 1lml-2 | [seq. related domains] | undefined |
undefined |
| 1cko-2 | [seq. related domains] | undefined |
undefined |
| 1pfsb-1 | [seq. related domains] | undefined |
undefined |
| 1jmca-2 | [seq. related domains] | undefined |
undefined |
| 1am2-1 | [seq. related domains] | undefined |
undefined |
| 1rvf2-2 | [seq. related domains] | undefined |
undefined |
| 2rel-1 | [seq. related domains] | undefined |
undefined |
| 2tssc-2 | [seq. related domains] | undefined |
undefined |
| 1sfe-1 | [seq. related domains] | undefined |
undefined |
| 1a6jb-1 | [seq. related domains] | undefined |
undefined |
| 1ihwb-1 | [seq. related domains] | undefined |
undefined |
| 1ah9-1 | [seq. related domains] | undefined |
undefined |
| 3vub-1 | [seq. related domains] | undefined |
undefined |
| 1ael-1 | [seq. related domains] | All beta |
Lipocalins |
| 1aqb-1 | [seq. related domains] | All beta |
Lipocalins |
| 1bebb-1 | [seq. related domains] | All beta |
Lipocalins |
| 1bbpb-1 | [seq. related domains] | All beta |
Lipocalins |
| 1mdam-1 | [seq. related domains] | Small proteins |
Methylamine dehydrogenase, L-chain |
| 1mph-1 | [seq. related domains] | All beta |
PH domain-like |
| 2dynb-1 | [seq. related domains] | All beta |
PH domain-like |
| 2pyp-1 | [seq. related domains] | Alpha and beta (a+b) |
Profilin-like |
| 1smpi-1 | [seq. related domains] | All beta |
Streptavidin-like |
| 2np1b-1 | [seq. related domains] | undefined |
undefined |
| 1irsa-1 | [seq. related domains] | undefined |
undefined |
| 1mai-1 | [seq. related domains] | undefined |
undefined |
| 1pbob-2 | [seq. related domains] | undefined |
undefined |
| 1shca-1 | [seq. related domains] | undefined |
undefined |
| 1awe-1 | [seq. related domains] | undefined |
undefined |
| 1x11b-1 | [seq. related domains] | undefined |
undefined |
| 1btkb-1 | [seq. related domains] | undefined |
undefined |
| 1bak-1 | [seq. related domains] | undefined |
undefined |
| 1iaa-1 | [seq. related domains] | Alpha and beta (a+b) |
Astacin domain II |
| 1ctn-3 | [seq. related domains] | Alpha and beta (a+b) |
FKBP-like |
| 1gky-2 | [seq. related domains] | Alpha and beta (a+b) |
P-loop containing nucleotide triphosphate hydrolases, inserted domain in Guanylate Kinase |
| 2bbi-1 | [seq. related domains] | Small proteins |
Small inhibitors, toxins, lectins |
| 1prxb-2 | [seq. related domains] | undefined |
undefined |
| 1whi-1 | [seq. related domains] | undefined |
undefined |
| 1aqt-1 | [seq. related domains] | undefined |
undefined |
| 1jrhh-2 | [seq. related domains] | undefined |
undefined |
| 1aonu-1 | [seq. related domains] | undefined |
undefined |
| 1jrhl-2 | [seq. related domains] | undefined |
undefined |
| 1lci-3 | [seq. related domains] | undefined |
undefined |
| 1a7xb-1 | [seq. related domains] | Alpha and beta (a+b) |
FKBP-like |
| 1kptb-1 | [seq. related domains] | Alpha and beta (a+b) |
Virally encoded KP4 toxin |
| 1pcfh-2 | [seq. related domains] | undefined |
undefined |
| 1kvec-2 | [seq. related domains] | undefined |
undefined |