3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 0.205

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Classes% of representative set
undefined 34.62
Small proteins 2.66
Alpha and beta (a/b) 1.69
Alpha and beta (a+b) 24.21
All beta 36.08
All alpha 0.73
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 34.62 22.48
Small proteins
Ada DNA repair protein, N-terminal domain (N-Ada 10) from SCOP 0.24 0.87
Antifungal protein (AGAFP) from SCOP 0.24 0.87
Methylamine dehydrogenase, L-chain from 3Dee 0.24 0.87
Ovomucoid/PCI-1 like inhibitors from SCOP 0.24 0.87
RING finger domain from 3Dee 0.24 0.87
Rubredoxin-like from SCOP 0.24 0.87
Small inhibitors, toxins, lectins from 3Dee 0.48 1.74
Snake toxin-like from SCOP 0.73 2.61
Alpha and beta (a/b)
Nucleotidyltransferases Domain I from 3Dee 0.48 0.73
PLP-dependent transferases Domain I from 3Dee 0.24 0.36
PLP-dependent transferases Domain II from 3Dee 0.24 0.36
PLP-dependent transferases smaller domain from 3Dee 0.73 1.09
Alpha and beta (a+b)
"histone-like" proteins from arhaea from 3Dee 0.24 0.52
2,3-Dihydroxybiphenyl dioxygenase (DHDB, BPHC enzyme) from 3Dee 0.48 1.04
A DNA topoisomerase I domain from 3Dee 0.48 1.04
ATP-grasp sub-domain II from 3Dee 0.97 2.07
Astacin domain II from 3Dee 0.24 0.52
CI-2 family of serine protease inhibitors from SCOP 0.24 0.52
Cell cycle regulatory proteins from SCOP 0.24 0.52
Chorismate mutase from 3Dee 0.24 0.52
Copper amino oxidase, domain 1 from 3Dee 0.24 0.52
Cystatin-like from SCOP 2.42 5.18
Cysteine proteinases Domain I from 3Dee 0.24 0.52
Cytochrome b5 from SCOP 0.24 0.52
DCoH-like from SCOP 0.48 1.04
Elongation Factor domain III from 3Dee 0.48 1.04
FKBP-like from SCOP 0.73 1.55
Ferredoxin-like from SCOP 4.84 10.36
Glutamine synthetase smaller domain from 3Dee 0.24 0.52
Hedgehog/DD-peptidase from SCOP 0.24 0.52
Histidine-containing phosphocarrier proteins (HPr) from SCOP 0.24 0.52
IF3-like from SCOP 0.24 0.52
Interleukin 8-like chemokines from 3Dee 0.48 1.04
KH-domain from SCOP 0.24 0.52
Microbal ribonucleases from 3Dee 0.73 1.55
Nucleoside triphosphate pyrophosphorylase (MutT) from SCOP 0.24 0.52
P-loop containing nucleotide triphosphate hydrolases, inserted domain in Guanylate Kinase from 3Dee 0.24 0.52
Phosphate binding protein-like inserted domain from 3Dee 0.24 0.52
Profilin-like from SCOP 0.48 1.04
Protein kinases (PK), catalytic core N terminal Domain from 3Dee 0.73 1.55
RNA bacteriophage capsid protein from SCOP 0.48 1.04
Ribonuclease A-like from 3Dee 0.48 1.04
Ribosomal protein L7/12, C-terminal fragment from SCOP 0.24 0.52
Ribosomal protein S5 domain 2-like from SCOP 0.24 0.52
RuBisCO, small subunit from SCOP 0.24 0.52
S-adenosylmethionine synthetase. MAT outer domain from 3Dee 0.73 1.55
SH2-like from SCOP 0.24 0.52
Subtilisin inhibitor from SCOP 0.24 0.52
TBP-like from SCOP 0.24 0.52
Tautomerase/MIF from SCOP 0.48 1.04
Thymidine phosphorylase Domain III from 3Dee 0.24 0.52
Virally encoded KP4 toxin from 3Dee 0.24 0.52
beta-Grasp from 3Dee 1.94 4.15
beta-Lactamase/D-ala carboxypeptidase Domain I from 3Dee 0.24 0.52
dsRBD & PDA domains from SCOP 0.73 1.55
All beta
Acid proteases Domain I from 3Dee 0.73 1.34
Barrel-sandwich hybrid from SCOP 1.21 2.23
Barwin-like endoglucanases from 3Dee 0.24 0.45
Colipase binding domain-like from 3Dee 0.48 0.89
Common fold of diphtheria toxin/transcription factors/cytochrome f from SCOP 0.97 1.79
Crystallins/protein S from 3Dee 0.48 0.89
Cupredoxins from SCOP 2.18 4.02
Double-stranded beta-helix, jelly-roll domain from 3Dee 0.73 1.34
Elongation factor Tu (EF-Tu), the C-terminal domain from 3Dee 0.24 0.45
Galactose-binding domain-like from SCOP 0.97 1.79
Immunoglobulin-like beta-sandwich from SCOP 10.90 20.09
Lipocalins from SCOP 0.97 1.79
Mu transposase, C-terminal domain from 3Dee 0.24 0.45
OB-fold from SCOP 2.18 4.02
PH domain-like from SCOP 0.48 0.89
Prealbumin-like from SCOP 0.48 0.89
Pyruvate kinase beta-barrel domain from SCOP 0.48 0.89
Reductase/elongation factor common domain from 3Dee 1.45 2.68
SH3-like barrel from SCOP 0.97 1.79
Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain from 3Dee 0.24 0.45
Streptavidin-like from SCOP 0.48 0.89
Trypsin-like serine proteases Domain I from 3Dee 0.97 1.79
Trypsin-like serine proteases Domain II from 3Dee 0.73 1.34
Tumor necrosis factor from 3Dee 0.48 0.89
Viral coat and capsid proteins from SCOP 5.08 9.38
alpha-Amylase inhibitor from 3Dee 0.24 0.45
alpha-Amylases, beta-sheet domain from 3Dee 0.97 1.79
beta-Clip from 3Dee 0.48 0.89
All alpha
Acyl carrier protein from 3Dee 0.24 0.49
Glycosyltransferases of the superhelical fold Domain II from 3Dee 0.24 0.49
Lipoxigenase-1, A DNA topoisomerase I domain from 3Dee 0.24 0.49

It is formed by merging the following clusters

Cluster 0

All domains in cluster 0 sub-divide into single membered clusters

1a7bd-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1eczb-2 [seq. related domains] undefined undefined

Cluster 1

Descend tree into cluster 1

1sso-1 [seq. related domains] Alpha and beta (a+b) "histone-like" proteins from arhaea
1vcc-1 [seq. related domains] Alpha and beta (a+b) A DNA topoisomerase I domain
1yua-2 [seq. related domains] Alpha and beta (a+b) A DNA topoisomerase I domain
1afp-1 [seq. related domains] Small proteins Antifungal protein (AGAFP)
1iaa-1 [seq. related domains] Alpha and beta (a+b) Astacin domain II
1bdo-1 [seq. related domains] All beta Barrel-sandwich hybrid
1iyv-1 [seq. related domains] All beta Barrel-sandwich hybrid
2pcfb-2 [seq. related domains] All beta Barrel-sandwich hybrid
1fyc-1 [seq. related domains] All beta Barrel-sandwich hybrid
1spub-1 [seq. related domains] Alpha and beta (a+b) Copper amino oxidase, domain 1
1dvd-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1iskb-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1spub-3 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1spub-2 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1a90-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1askb-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1std-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1udii-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1ksib-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
4mond-1 [seq. related domains] Alpha and beta (a+b) Cystatin-like
1csbe-1 [seq. related domains] Alpha and beta (a+b) Cysteine proteinases Domain I
1ctn-3 [seq. related domains] Alpha and beta (a+b) FKBP-like
1a7xb-1 [seq. related domains] Alpha and beta (a+b) FKBP-like
1mi2b-1 [seq. related domains] Alpha and beta (a+b) Interleukin 8-like chemokines
1sdf-1 [seq. related domains] Alpha and beta (a+b) Interleukin 8-like chemokines
1bbpb-1 [seq. related domains] All beta Lipocalins
1aqb-1 [seq. related domains] All beta Lipocalins
1bebb-1 [seq. related domains] All beta Lipocalins
1ael-1 [seq. related domains] All beta Lipocalins
1yge-3 [seq. related domains] All alpha Lipoxigenase-1, A DNA topoisomerase I domain
1mdam-1 [seq. related domains] Small proteins Methylamine dehydrogenase, L-chain
1a2pc-1 [seq. related domains] Alpha and beta (a+b) Microbal ribonucleases
1rghb-1 [seq. related domains] Alpha and beta (a+b) Microbal ribonucleases
5birb-1 [seq. related domains] Alpha and beta (a+b) Microbal ribonucleases
1bcmb-2 [seq. related domains] All beta Mu transposase, C-terminal domain
1krt-1 [seq. related domains] All beta OB-fold
1ae3-1 [seq. related domains] All beta OB-fold
1aszb-1 [seq. related domains] All beta OB-fold
1mef-1 [seq. related domains] All beta OB-fold
1se4-2 [seq. related domains] All beta OB-fold
1bcpi-2 [seq. related domains] All beta OB-fold
1bcpl-1 [seq. related domains] All beta OB-fold
1bcpk-1 [seq. related domains] All beta OB-fold
4ull-1 [seq. related domains] All beta OB-fold
1gky-2 [seq. related domains] Alpha and beta (a+b) P-loop containing nucleotide triphosphate hydrolases, inserted domain in Guanylate Kinase
1mph-1 [seq. related domains] All beta PH domain-like
2dynb-1 [seq. related domains] All beta PH domain-like
2pyp-1 [seq. related domains] Alpha and beta (a+b) Profilin-like
1hlup-1 [seq. related domains] Alpha and beta (a+b) Profilin-like
1qbec-1 [seq. related domains] Alpha and beta (a+b) RNA bacteriophage capsid protein
1mvbc-1 [seq. related domains] Alpha and beta (a+b) RNA bacteriophage capsid protein
4rsd-1 [seq. related domains] Alpha and beta (a+b) Ribonuclease A-like
1onc-1 [seq. related domains] Alpha and beta (a+b) Ribonuclease A-like
1acmd-2 [seq. related domains] Small proteins Rubredoxin-like
1lcka-2 [seq. related domains] Alpha and beta (a+b) SH2-like
1bib-3 [seq. related domains] All beta SH3-like barrel
1pht-1 [seq. related domains] All beta SH3-like barrel
1psf-1 [seq. related domains] All beta SH3-like barrel
1nlpc-1 [seq. related domains] All beta SH3-like barrel
2bbi-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1smpi-1 [seq. related domains] All beta Streptavidin-like
1swgd-1 [seq. related domains] All beta Streptavidin-like
1po22-2 [seq. related domains] All beta Viral coat and capsid proteins
1kptb-1 [seq. related domains] Alpha and beta (a+b) Virally encoded KP4 toxin
1a5ob-1 [seq. related domains] All beta beta-Clip
1tem-1 [seq. related domains] Alpha and beta (a+b) beta-Lactamase/D-ala carboxypeptidase Domain I
1stu-1 [seq. related domains] Alpha and beta (a+b) dsRBD & PDA domains
1pkp-1 [seq. related domains] Alpha and beta (a+b) dsRBD & PDA domains
1ah5-3 [seq. related domains] Alpha and beta (a+b) dsRBD & PDA domains
1pfsb-1 [seq. related domains] undefined undefined
1prxb-2 [seq. related domains] undefined undefined
1jmca-2 [seq. related domains] undefined undefined
1sro-1 [seq. related domains] undefined undefined
1sfe-1 [seq. related domains] undefined undefined
1aqt-1 [seq. related domains] undefined undefined
1bak-1 [seq. related domains] undefined undefined
1bb9-1 [seq. related domains] undefined undefined
1a0i-2 [seq. related domains] undefined undefined
1vif-1 [seq. related domains] undefined undefined
1rfs-1 [seq. related domains] undefined undefined
1msi-1 [seq. related domains] undefined undefined
2nef-1 [seq. related domains] undefined undefined
1a63-1 [seq. related domains] undefined undefined
1awe-1 [seq. related domains] undefined undefined
1jrhh-2 [seq. related domains] undefined undefined
1irsa-1 [seq. related domains] undefined undefined
2np1b-1 [seq. related domains] undefined undefined
1lt6p-1 [seq. related domains] undefined undefined
1pdr-1 [seq. related domains] undefined undefined
1ahjh-3 [seq. related domains] undefined undefined
1aqzb-1 [seq. related domains] undefined undefined
1auub-1 [seq. related domains] undefined undefined
1shca-1 [seq. related domains] undefined undefined
1klo-1 [seq. related domains] undefined undefined
1pcfh-2 [seq. related domains] undefined undefined
1lml-2 [seq. related domains] undefined undefined
1cko-2 [seq. related domains] undefined undefined
1mai-1 [seq. related domains] undefined undefined
1cuk-1 [seq. related domains] undefined undefined
1aonu-1 [seq. related domains] undefined undefined
1jrhl-2 [seq. related domains] undefined undefined
1am2-1 [seq. related domains] undefined undefined
1pbob-2 [seq. related domains] undefined undefined
1rvf2-2 [seq. related domains] undefined undefined
1kwab-1 [seq. related domains] undefined undefined
1jmca-1 [seq. related domains] undefined undefined
1ospo-2 [seq. related domains] undefined undefined
2tssc-2 [seq. related domains] undefined undefined
3vub-1 [seq. related domains] undefined undefined
1whi-1 [seq. related domains] undefined undefined
1kvec-2 [seq. related domains] undefined undefined
1lci-3 [seq. related domains] undefined undefined
1ihwb-1 [seq. related domains] undefined undefined
1ah9-1 [seq. related domains] undefined undefined
1x11b-1 [seq. related domains] undefined undefined
1btkb-1 [seq. related domains] undefined undefined
1a6jb-1 [seq. related domains] undefined undefined
2rel-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

1han-2 [seq. related domains] Alpha and beta (a+b) 2,3-Dihydroxybiphenyl dioxygenase (DHDB, BPHC enzyme)
1han-1 [seq. related domains] Alpha and beta (a+b) 2,3-Dihydroxybiphenyl dioxygenase (DHDB, BPHC enzyme)
1bncb-3 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1scue-2 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1iow-3 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1gsh-3 [seq. related domains] Alpha and beta (a+b) ATP-grasp sub-domain II
1hvc-2 [seq. related domains] All beta Acid proteases Domain I
3fivb-1 [seq. related domains] All beta Acid proteases Domain I
1mvpb-1 [seq. related domains] All beta Acid proteases Domain I
1acp-1 [seq. related domains] All alpha Acyl carrier protein
1adn-1 [seq. related domains] Small proteins Ada DNA repair protein, N-terminal domain (N-Ada 10)
1bncb-4 [seq. related domains] All beta Barrel-sandwich hybrid
1bw4-1 [seq. related domains] All beta Barwin-like endoglucanases
1cirb-1 [seq. related domains] Alpha and beta (a+b) CI-2 family of serine protease inhibitors
1dktb-1 [seq. related domains] Alpha and beta (a+b) Cell cycle regulatory proteins
1comc-1 [seq. related domains] Alpha and beta (a+b) Chorismate mutase
1rp1-2 [seq. related domains] All beta Colipase binding domain-like
1yge-1 [seq. related domains] All beta Colipase binding domain-like
1exh-1 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
1sgk-3 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
2pcfb-1 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
1ycsa-1 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
1a5db-2 [seq. related domains] All beta Crystallins/protein S
1prs-2 [seq. related domains] All beta Crystallins/protein S
1adwb-1 [seq. related domains] All beta Cupredoxins
1aozb-3 [seq. related domains] All beta Cupredoxins
1aozb-2 [seq. related domains] All beta Cupredoxins
1ar1b-2 [seq. related domains] All beta Cupredoxins
1ag0b-1 [seq. related domains] All beta Cupredoxins
1iuz-1 [seq. related domains] All beta Cupredoxins
1aozb-1 [seq. related domains] All beta Cupredoxins
2cbp-1 [seq. related domains] All beta Cupredoxins
1ndsc-1 [seq. related domains] All beta Cupredoxins
2axx-1 [seq. related domains] Alpha and beta (a+b) Cytochrome b5
1xxcf-1 [seq. related domains] Alpha and beta (a+b) DCoH-like
1dcph-1 [seq. related domains] Alpha and beta (a+b) DCoH-like
1caxe-5 [seq. related domains] All beta Double-stranded beta-helix, jelly-roll domain
1wapv-1 [seq. related domains] All beta Double-stranded beta-helix, jelly-roll domain
2phlb-5 [seq. related domains] All beta Double-stranded beta-helix, jelly-roll domain
1efgb-1 [seq. related domains] Alpha and beta (a+b) Elongation Factor domain III
1efgc-1 [seq. related domains] Alpha and beta (a+b) Elongation Factor domain III
1aipf-3 [seq. related domains] All beta Elongation factor Tu (EF-Tu), the C-terminal domain
1grj-2 [seq. related domains] Alpha and beta (a+b) FKBP-like
1kdnc-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1rcxv-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1psdb-3 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1vjw-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1mli-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1auda-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1ris-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2pii-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1eayd-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2acy-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1spbp-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1mla-2 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1up1-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1elo-5 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1pyta-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1dhmb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
2fxb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1regy-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1fxrb-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1acmd-1 [seq. related domains] Alpha and beta (a+b) Ferredoxin-like
1bhgb-1 [seq. related domains] All beta Galactose-binding domain-like
1gog-1 [seq. related domains] All beta Galactose-binding domain-like
1ciy-3 [seq. related domains] All beta Galactose-binding domain-like
1bgmp-2 [seq. related domains] All beta Galactose-binding domain-like
1lgr-1 [seq. related domains] Alpha and beta (a+b) Glutamine synthetase smaller domain
3tf4b-3 [seq. related domains] All alpha Glycosyltransferases of the superhelical fold Domain II
1vhh-1 [seq. related domains] Alpha and beta (a+b) Hedgehog/DD-peptidase
1jem-1 [seq. related domains] Alpha and beta (a+b) Histidine-containing phosphocarrier proteins (HPr)
1tig-1 [seq. related domains] Alpha and beta (a+b) IF3-like
1bhgb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1eso-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1wiqb-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1a25b-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1bgmp-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1gog-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1zxq-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1tiu-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1azvb-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
3dpa-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1cfb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
2msph-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ctn-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1dant-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ll1-4 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
2ncm-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1fieb-5 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1wiqb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1zxq-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1cid-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1a8jl-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1bgmp-5 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1dant-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1pamb-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ramb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1fieb-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1fnf-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1hwgc-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
3dpa-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1wiu-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1hnf-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ebpb-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1suh-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1euu-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1itbb-3 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1jrhi-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1neu-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ten-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1cfb-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1jrhl-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1cid-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1ncob-1 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1hwgc-2 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1fieb-4 [seq. related domains] All beta Immunoglobulin-like beta-sandwich
1vih-1 [seq. related domains] Alpha and beta (a+b) KH-domain
1tum-1 [seq. related domains] Alpha and beta (a+b) Nucleoside triphosphate pyrophosphorylase (MutT)
2bpgb-2 [seq. related domains] Alpha and beta (a/b) Nucleotidyltransferases Domain I
1knyb-1 [seq. related domains] Alpha and beta (a/b) Nucleotidyltransferases Domain I
1an1i-1 [seq. related domains] Small proteins Ovomucoid/PCI-1 like inhibitors
1ajsb-1 [seq. related domains] Alpha and beta (a/b) PLP-dependent transferases Domain I
2tplb-2 [seq. related domains] Alpha and beta (a/b) PLP-dependent transferases Domain II
2canc-1 [seq. related domains] Alpha and beta (a/b) PLP-dependent transferases smaller domain
2tplb-1 [seq. related domains] Alpha and beta (a/b) PLP-dependent transferases smaller domain
1ordb-3 [seq. related domains] Alpha and beta (a/b) PLP-dependent transferases smaller domain
1rkm-2 [seq. related domains] Alpha and beta (a+b) Phosphate binding protein-like inserted domain
2tryb-1 [seq. related domains] All beta Prealbumin-like
1pamb-4 [seq. related domains] All beta Prealbumin-like
1aq1-2 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core N terminal Domain
2csn-1 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core N terminal Domain
1ir3a-1 [seq. related domains] Alpha and beta (a+b) Protein kinases (PK), catalytic core N terminal Domain
1a3wb-3 [seq. related domains] All beta Pyruvate kinase beta-barrel domain
1pyk-2 [seq. related domains] All beta Pyruvate kinase beta-barrel domain
1bor-1 [seq. related domains] Small proteins RING finger domain
1efga-2 [seq. related domains] All beta Reductase/elongation factor common domain
1fdr-1 [seq. related domains] All beta Reductase/elongation factor common domain
1quf-1 [seq. related domains] All beta Reductase/elongation factor common domain
1aipf-1 [seq. related domains] All beta Reductase/elongation factor common domain
1ndh-1 [seq. related domains] All beta Reductase/elongation factor common domain
2pia-1 [seq. related domains] All beta Reductase/elongation factor common domain
1ctf-1 [seq. related domains] Alpha and beta (a+b) Ribosomal protein L7/12, C-terminal fragment
1pkp-2 [seq. related domains] Alpha and beta (a+b) Ribosomal protein S5 domain 2-like
1rcxw-1 [seq. related domains] Alpha and beta (a+b) RuBisCO, small subunit
1fugb-3 [seq. related domains] Alpha and beta (a+b) S-adenosylmethionine synthetase. MAT outer domain
1fugb-2 [seq. related domains] Alpha and beta (a+b) S-adenosylmethionine synthetase. MAT outer domain
1fugb-1 [seq. related domains] Alpha and beta (a+b) S-adenosylmethionine synthetase. MAT outer domain
1bvp6-2 [seq. related domains] All beta Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain
1ethd-1 [seq. related domains] Small proteins Small inhibitors, toxins, lectins
1txb-1 [seq. related domains] Small proteins Snake toxin-like
1cdr-1 [seq. related domains] Small proteins Snake toxin-like
1mahf-1 [seq. related domains] Small proteins Snake toxin-like
3ssi-1 [seq. related domains] Alpha and beta (a+b) Subtilisin inhibitor
1aisa-2 [seq. related domains] Alpha and beta (a+b) TBP-like
1otgc-1 [seq. related domains] Alpha and beta (a+b) Tautomerase/MIF
1otff-3 [seq. related domains] Alpha and beta (a+b) Tautomerase/MIF
1tpt-3 [seq. related domains] Alpha and beta (a+b) Thymidine phosphorylase Domain III
1arc-2 [seq. related domains] All beta Trypsin-like serine proteases Domain I
1aksa-2 [seq. related domains] All beta Trypsin-like serine proteases Domain I
2sga-1 [seq. related domains] All beta Trypsin-like serine proteases Domain I
1tal-1 [seq. related domains] All beta Trypsin-like serine proteases Domain I
2sga-2 [seq. related domains] All beta Trypsin-like serine proteases Domain II
1arc-1 [seq. related domains] All beta Trypsin-like serine proteases Domain II
1sgfa-2 [seq. related domains] All beta Trypsin-like serine proteases Domain II
1a8mc-1 [seq. related domains] All beta Tumor necrosis factor
1aly-1 [seq. related domains] All beta Tumor necrosis factor
1cwpc-1 [seq. related domains] All beta Viral coat and capsid proteins
1rvf2-1 [seq. related domains] All beta Viral coat and capsid proteins
2stv-1 [seq. related domains] All beta Viral coat and capsid proteins
1tnva-1 [seq. related domains] All beta Viral coat and capsid proteins
1a6ca-2 [seq. related domains] All beta Viral coat and capsid proteins
2tbvc-2 [seq. related domains] All beta Viral coat and capsid proteins
1tmf1-1 [seq. related domains] All beta Viral coat and capsid proteins
1a6ca-3 [seq. related domains] All beta Viral coat and capsid proteins
1al0g-1 [seq. related domains] All beta Viral coat and capsid proteins
1tnvb-1 [seq. related domains] All beta Viral coat and capsid proteins
1a6ca-1 [seq. related domains] All beta Viral coat and capsid proteins
1smvc-1 [seq. related domains] All beta Viral coat and capsid proteins
1bmv2-1 [seq. related domains] All beta Viral coat and capsid proteins
1bmv2-2 [seq. related domains] All beta Viral coat and capsid proteins
2bbvb-1 [seq. related domains] All beta Viral coat and capsid proteins
1po21-1 [seq. related domains] All beta Viral coat and capsid proteins
1fod1-1 [seq. related domains] All beta Viral coat and capsid proteins
1po23-1 [seq. related domains] All beta Viral coat and capsid proteins
1bmv1-1 [seq. related domains] All beta Viral coat and capsid proteins
1tnvc-1 [seq. related domains] All beta Viral coat and capsid proteins
2ait-1 [seq. related domains] All beta alpha-Amylase inhibitor
6taa-2 [seq. related domains] All beta alpha-Amylases, beta-sheet domain
1dhka-2 [seq. related domains] All beta alpha-Amylases, beta-sheet domain
1vjs-3 [seq. related domains] All beta alpha-Amylases, beta-sheet domain
1pamb-2 [seq. related domains] All beta alpha-Amylases, beta-sheet domain
1dun-1 [seq. related domains] All beta beta-Clip
2tssc-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1aarb-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2cjo-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1igca-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2ptl-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1se4-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1put-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
1tif-1 [seq. related domains] Alpha and beta (a+b) beta-Grasp
2tbd-1 [seq. related domains] undefined undefined
1tul-1 [seq. related domains] undefined undefined
1rhoc-1 [seq. related domains] undefined undefined
1a02n-1 [seq. related domains] undefined undefined
1qbb-4 [seq. related domains] undefined undefined
1svb-2 [seq. related domains] undefined undefined
1skyb-1 [seq. related domains] undefined undefined
1ay9b-1 [seq. related domains] undefined undefined
1rmd-1 [seq. related domains] undefined undefined
1qapb-1 [seq. related domains] undefined undefined
1rfa-1 [seq. related domains] undefined undefined
1fohd-2 [seq. related domains] undefined undefined
1skye-1 [seq. related domains] undefined undefined
1elo-3 [seq. related domains] undefined undefined
4kbpd-1 [seq. related domains] undefined undefined
1auyc-1 [seq. related domains] undefined undefined
1xbrb-1 [seq. related domains] undefined undefined
1acc-3 [seq. related domains] undefined undefined
1hdj-1 [seq. related domains] undefined undefined
1vdeb-3 [seq. related domains] undefined undefined
1frod-4 [seq. related domains] undefined undefined
1lci-4 [seq. related domains] undefined undefined
4rhn-1 [seq. related domains] undefined undefined
1jsg-1 [seq. related domains] undefined undefined
1hmva-2 [seq. related domains] undefined undefined
2aw0-1 [seq. related domains] undefined undefined
1ramb-1 [seq. related domains] undefined undefined
1ksr-1 [seq. related domains] undefined undefined
1exfa-1 [seq. related domains] undefined undefined
2sak-1 [seq. related domains] undefined undefined
1sfp-1 [seq. related domains] undefined undefined
1whp-1 [seq. related domains] undefined undefined
1amx-1 [seq. related domains] undefined undefined
1aw8e-1 [seq. related domains] undefined undefined
2amg-2 [seq. related domains] undefined undefined
1bgw-3 [seq. related domains] undefined undefined
1fdo-4 [seq. related domains] undefined undefined
2ppsc-1 [seq. related domains] undefined undefined
2snwb-2 [seq. related domains] undefined undefined
1axj-1 [seq. related domains] undefined undefined
2u1a-1 [seq. related domains] undefined undefined
1ndsc-2 [seq. related domains] undefined undefined
1mifc-2 [seq. related domains] undefined undefined
2snwb-1 [seq. related domains] undefined undefined
1ebpb-1 [seq. related domains] undefined undefined
1rcy-1 [seq. related domains] undefined undefined
1sftb-1 [seq. related domains] undefined undefined
5aop-3 [seq. related domains] undefined undefined
1qbb-1 [seq. related domains] undefined undefined
1vaob-1 [seq. related domains] undefined undefined
1an7b-2 [seq. related domains] undefined undefined
1nbcb-1 [seq. related domains] undefined undefined
1xer-1 [seq. related domains] undefined undefined
1ah1-1 [seq. related domains] undefined undefined
1ahm-1 [seq. related domains] undefined undefined
1a34a-1 [seq. related domains] undefined undefined
1ulp-1 [seq. related domains] undefined undefined
1exfa-2 [seq. related domains] undefined undefined
1dapb-2 [seq. related domains] undefined undefined
2glia-1 [seq. related domains] undefined undefined
1fit-1 [seq. related domains] undefined undefined
1stme-1 [seq. related domains] undefined undefined
1lktf-3 [seq. related domains] undefined undefined
1an7b-1 [seq. related domains] undefined undefined
1erk-2 [seq. related domains] undefined undefined
1ag4-1 [seq. related domains] undefined undefined
1fsu-2 [seq. related domains] undefined undefined
1havb-2 [seq. related domains] undefined undefined
1havb-1 [seq. related domains] undefined undefined
1cumb-1 [seq. related domains] undefined undefined
4eng-1 [seq. related domains] undefined undefined
1itbb-1 [seq. related domains] undefined undefined
1cg2d-2 [seq. related domains] undefined undefined
2rgf-1 [seq. related domains] undefined undefined
2hgf-1 [seq. related domains] undefined undefined
1frod-2 [seq. related domains] undefined undefined
5aop-1 [seq. related domains] undefined undefined
1hqi-1 [seq. related domains] undefined undefined
1cto-1 [seq. related domains] undefined undefined
1wkt-1 [seq. related domains] undefined undefined
1vdeb-2 [seq. related domains] undefined undefined
1af5-1 [seq. related domains] undefined undefined
1acc-4 [seq. related domains] undefined undefined
2fmr-1 [seq. related domains] undefined undefined
1lbu-2 [seq. related domains] undefined undefined
1anu-1 [seq. related domains] undefined undefined
1fsz-2 [seq. related domains] undefined undefined
1ad2-1 [seq. related domains] undefined undefined
1itbb-2 [seq. related domains] undefined undefined
1a06-2 [seq. related domains] undefined undefined
4dmr-4 [seq. related domains] undefined undefined

Cluster 3

Descend tree into cluster 3

1guqd-3 [seq. related domains] undefined undefined
1new-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


3dee@compbio.dundee.ac.uk