3 Dee - Database of Protein Domain Definitions

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The current cluster is formed at a score of 2.836

Ascend tree (bring in more domains)

Classes% of representative set
undefined 36.36
All beta 54.55
All alpha 9.09
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 36.36 0.63
All beta
Common fold of diphtheria toxin/transcription factors/cytochrome f from SCOP 18.18 0.89
Tumor necrosis factor from 3Dee 18.18 0.89
Viral coat and capsid proteins from SCOP 18.18 0.89
All alpha
Glycosyltransferases of the superhelical fold Domain II from 3Dee 9.09 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1aly-1 [seq. related domains] All beta Tumor necrosis factor
1a8mc-1 [seq. related domains] All beta Tumor necrosis factor
2tbvc-2 [seq. related domains] All beta Viral coat and capsid proteins
1al0g-1 [seq. related domains] All beta Viral coat and capsid proteins
1anu-1 [seq. related domains] undefined undefined
1sfp-1 [seq. related domains] undefined undefined
1amx-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

2pcfb-1 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
1sgk-3 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
3tf4b-3 [seq. related domains] All alpha Glycosyltransferases of the superhelical fold Domain II
1nbcb-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.

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