3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 1.956

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Classes% of representative set
undefined 21.95
All beta 75.61
All alpha 2.44
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 21.95 1.42
All beta
Common fold of diphtheria toxin/transcription factors/cytochrome f from SCOP 4.88 0.89
Double-stranded beta-helix, jelly-roll domain from 3Dee 4.88 0.89
Galactose-binding domain-like from SCOP 9.76 1.79
Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain from 3Dee 2.44 0.45
Tumor necrosis factor from 3Dee 4.88 0.89
Viral coat and capsid proteins from SCOP 48.78 8.93
All alpha
Glycosyltransferases of the superhelical fold Domain II from 3Dee 2.44 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1tnvb-1 [seq. related domains] All beta Viral coat and capsid proteins
1tnvc-1 [seq. related domains] All beta Viral coat and capsid proteins
1bmv1-1 [seq. related domains] All beta Viral coat and capsid proteins
1po23-1 [seq. related domains] All beta Viral coat and capsid proteins
1tmf1-1 [seq. related domains] All beta Viral coat and capsid proteins
1a6ca-1 [seq. related domains] All beta Viral coat and capsid proteins
2bbvb-1 [seq. related domains] All beta Viral coat and capsid proteins
1bmv2-1 [seq. related domains] All beta Viral coat and capsid proteins
1rvf2-1 [seq. related domains] All beta Viral coat and capsid proteins
1a6ca-2 [seq. related domains] All beta Viral coat and capsid proteins
1a6ca-3 [seq. related domains] All beta Viral coat and capsid proteins
1fod1-1 [seq. related domains] All beta Viral coat and capsid proteins
1cwpc-1 [seq. related domains] All beta Viral coat and capsid proteins
1smvc-1 [seq. related domains] All beta Viral coat and capsid proteins
1bmv2-2 [seq. related domains] All beta Viral coat and capsid proteins
1po21-1 [seq. related domains] All beta Viral coat and capsid proteins
2stv-1 [seq. related domains] All beta Viral coat and capsid proteins
1tnva-1 [seq. related domains] All beta Viral coat and capsid proteins
1a34a-1 [seq. related domains] undefined undefined
1stme-1 [seq. related domains] undefined undefined
1auyc-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

2pcfb-1 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
1sgk-3 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
1caxe-5 [seq. related domains] All beta Double-stranded beta-helix, jelly-roll domain
2phlb-5 [seq. related domains] All beta Double-stranded beta-helix, jelly-roll domain
1bgmp-2 [seq. related domains] All beta Galactose-binding domain-like
1gog-1 [seq. related domains] All beta Galactose-binding domain-like
1bhgb-1 [seq. related domains] All beta Galactose-binding domain-like
1ciy-3 [seq. related domains] All beta Galactose-binding domain-like
3tf4b-3 [seq. related domains] All alpha Glycosyltransferases of the superhelical fold Domain II
1bvp6-2 [seq. related domains] All beta Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain
1a8mc-1 [seq. related domains] All beta Tumor necrosis factor
1aly-1 [seq. related domains] All beta Tumor necrosis factor
1al0g-1 [seq. related domains] All beta Viral coat and capsid proteins
2tbvc-2 [seq. related domains] All beta Viral coat and capsid proteins
1amx-1 [seq. related domains] undefined undefined
1ahm-1 [seq. related domains] undefined undefined
1sfp-1 [seq. related domains] undefined undefined
1nbcb-1 [seq. related domains] undefined undefined
1ulp-1 [seq. related domains] undefined undefined
1anu-1 [seq. related domains] undefined undefined

Enter PDB code - optionally suffixing the code with the chain id.


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