3 Dee - Database of Protein Domain Definitions

The current cluster is formed at a score of 2.276

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• Classes

• All alpha folds
• All beta folds
• undefined folds

• Cluster 1
• Cluster 2

Breakdown into folds	% of cluster	% of class
undefined
undefined from 3Dee	30.00	0.94
All beta
Common fold of diphtheria toxin/transcription factors/cytochrome f from SCOP	10.00	0.89
Double-stranded beta-helix, jelly-roll domain from 3Dee	10.00	0.89
Galactose-binding domain-like from SCOP	20.00	1.79
Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain from 3Dee	5.00	0.45
Tumor necrosis factor from 3Dee	10.00	0.89
Viral coat and capsid proteins from SCOP	10.00	0.89
All alpha
Glycosyltransferases of the superhelical fold Domain II from 3Dee	5.00	0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1sgk-3	[seq. related domains]	All beta	Common fold of diphtheria toxin/transcription factors/cytochrome f
2pcfb-1	[seq. related domains]	All beta	Common fold of diphtheria toxin/transcription factors/cytochrome f
1caxe-5	[seq. related domains]	All beta	Double-stranded beta-helix, jelly-roll domain
2phlb-5	[seq. related domains]	All beta	Double-stranded beta-helix, jelly-roll domain
3tf4b-3	[seq. related domains]	All alpha	Glycosyltransferases of the superhelical fold Domain II
1bvp6-2	[seq. related domains]	All beta	Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain
1a8mc-1	[seq. related domains]	All beta	Tumor necrosis factor
1aly-1	[seq. related domains]	All beta	Tumor necrosis factor
2tbvc-2	[seq. related domains]	All beta	Viral coat and capsid proteins
1al0g-1	[seq. related domains]	All beta	Viral coat and capsid proteins
1anu-1	[seq. related domains]	undefined	undefined
1sfp-1	[seq. related domains]	undefined	undefined
1nbcb-1	[seq. related domains]	undefined	undefined
1amx-1	[seq. related domains]	undefined	undefined
1ahm-1	[seq. related domains]	undefined	undefined

Cluster 2

Descend tree into cluster 2

1bgmp-2	[seq. related domains]	All beta	Galactose-binding domain-like
1gog-1	[seq. related domains]	All beta	Galactose-binding domain-like
1ciy-3	[seq. related domains]	All beta	Galactose-binding domain-like
1bhgb-1	[seq. related domains]	All beta	Galactose-binding domain-like
1ulp-1	[seq. related domains]	undefined	undefined

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