3 Dee - Database of Protein Domain Definitions


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The current cluster is formed at a score of 2.588

Ascend tree (bring in more domains)

Classes% of representative set
undefined 33.33
All beta 60.00
All alpha 6.67
Breakdown into folds% of cluster % of class
undefined
undefined from 3Dee 33.33 0.79
All beta
Common fold of diphtheria toxin/transcription factors/cytochrome f from SCOP 13.33 0.89
Double-stranded beta-helix, jelly-roll domain from 3Dee 13.33 0.89
Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain from 3Dee 6.67 0.45
Tumor necrosis factor from 3Dee 13.33 0.89
Viral coat and capsid proteins from SCOP 13.33 0.89
All alpha
Glycosyltransferases of the superhelical fold Domain II from 3Dee 6.67 0.49

It is formed by merging the following clusters

Cluster 1

Descend tree into cluster 1

1sgk-3 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
2pcfb-1 [seq. related domains] All beta Common fold of diphtheria toxin/transcription factors/cytochrome f
3tf4b-3 [seq. related domains] All alpha Glycosyltransferases of the superhelical fold Domain II
1aly-1 [seq. related domains] All beta Tumor necrosis factor
1a8mc-1 [seq. related domains] All beta Tumor necrosis factor
1al0g-1 [seq. related domains] All beta Viral coat and capsid proteins
2tbvc-2 [seq. related domains] All beta Viral coat and capsid proteins
1anu-1 [seq. related domains] undefined undefined
1sfp-1 [seq. related domains] undefined undefined
1nbcb-1 [seq. related domains] undefined undefined
1amx-1 [seq. related domains] undefined undefined
1ahm-1 [seq. related domains] undefined undefined

Cluster 2

Descend tree into cluster 2

2phlb-5 [seq. related domains] All beta Double-stranded beta-helix, jelly-roll domain
1caxe-5 [seq. related domains] All beta Double-stranded beta-helix, jelly-roll domain
1bvp6-2 [seq. related domains] All beta Segmented RNA-genome viruses' proteins Bluetongue virus coat protein central domain

Enter PDB code - optionally suffixing the code with the chain id.


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