PIP.Domains.Interactions
Class DistanceInteraction

java.lang.Object
  PIP.Domains.Interactions.DomainInteraction
      PIP.Domains.Interactions.DistanceInteraction

public class DistanceInteraction
extends DomainInteraction

Constructor Summary

DistanceInteraction(Pair<Domain> domains, double maxResDist, double max_plus_VDW, java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>> VDWmap)

Method Summary

static double	calculateMaxDistance(java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>> map, Atom a1, Atom a2, double distance)
static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>>	readInVanDerWals()

Methods inherited from class PIP.Domains.Interactions.DomainInteraction

getAssembly, getDomainWithUniqueId, getFamilyPair, getFamilyPair, getFirstDomain, getInteractingResidues, getInteractingSurfaces, getInteractionSurface, getInteractionSurface, getNumInteractingAtoms, getNumInteractingResidues, getOppositeInteractingSurface, getOppositeInteractingSurface, getSecondDomain, isHomodimer, isIntraMolecular, isPQSGenerated, isProteinInteraction

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DistanceInteraction

public DistanceInteraction(Pair<Domain> domains,
                           double maxResDist,
                           double max_plus_VDW,
                           java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>> VDWmap)
                    throws java.lang.Exception

Throws:

java.lang.Exception

Method Detail

calculateMaxDistance

public static double calculateMaxDistance(java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>> map,
                                          Atom a1,
                                          Atom a2,
                                          double distance)

readInVanDerWals

public static java.util.Map<java.lang.String,java.util.Map<java.lang.String,java.lang.Double>> readInVanDerWals()
                                                                                                         throws java.io.IOException

Throws:

java.io.IOException