PIP.IO.Blast
Class FormatDBFileCreator

java.lang.Object
  PIP.IO.Blast.FormatDBFileCreator

public class FormatDBFileCreator
extends java.lang.Object

Constructor Summary

FormatDBFileCreator()

Method Summary

static void	createFormatDBFilesForBlast(FamilyType hft)
static void	createHmmerFiles(FamilyType hft)
static void	main(java.lang.String[] args)
static void	printOutFormatDBFileAll(Family fam, java.util.Collection<Domain> domains, java.io.PrintStream os)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FormatDBFileCreator

public FormatDBFileCreator()
                    throws java.lang.Exception

Throws:

java.lang.Exception

Method Detail

main

public static void main(java.lang.String[] args)

createFormatDBFilesForBlast

public static void createFormatDBFilesForBlast(FamilyType hft)
                                        throws java.lang.Exception

Throws:

java.lang.Exception

createHmmerFiles

public static void createHmmerFiles(FamilyType hft)
                             throws java.lang.Exception

Throws:

java.lang.Exception

printOutFormatDBFileAll

public static void printOutFormatDBFileAll(Family fam,
                                           java.util.Collection<Domain> domains,
                                           java.io.PrintStream os)