PIP.IO.CreatePeripheralData
Class PDBFile

java.lang.Object
  PIP.IO.CreatePeripheralData.PDBFile

Direct Known Subclasses:

PDBFileChainBased, PDBFileDomainBased

public class PDBFile
extends java.lang.Object

Field Summary

static java.lang.String	FORMAT_STRING_old This is the format for the Hydrogen residue
static java.lang.String	FORMAT_STRING_rightJustifiedAtomName This is the format for all other residue types but hydrogen

Constructor Summary

PDBFile(java.io.PrintStream out)

Method Summary

void	writeOutRepresentativeCoordinates(double[][] repCo, java.lang.String chain)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

FORMAT_STRING_old

public static final java.lang.String FORMAT_STRING_old

This is the format for the Hydrogen residue

See Also:

Constant Field Values

FORMAT_STRING_rightJustifiedAtomName

public static final java.lang.String FORMAT_STRING_rightJustifiedAtomName

This is the format for all other residue types but hydrogen

See Also:

Constant Field Values

Constructor Detail

PDBFile

public PDBFile(java.io.PrintStream out)

Parameters:

out - - a PrintStream to which to write the PDB file info

Method Detail

writeOutRepresentativeCoordinates

public void writeOutRepresentativeCoordinates(double[][] repCo,
                                              java.lang.String chain)