PIP.IO.StampPackage
Class RMSDComponents

java.lang.Object
  PIP.IO.StampPackage.RMSDComponents

public class RMSDComponents
extends java.lang.Object

Constructor Summary

RMSDComponents(Domain reference, java.util.List<java.lang.Character> referenceAlignment, Domain alternative, java.util.List<java.lang.Character> alternativeAlignment, double[][] transform)

Method Summary

Domain	getAlternative()
java.util.List<java.lang.Character>	getAlternativeAlignment()
Domain	getReference()
java.util.List<java.lang.Character>	getReferenceAlignment()
double	getRMSD()
double[][]	getTransform()
void	setAlternative(Domain alternative)
void	setAlternativeAlignment(java.util.List<java.lang.Character> alternativeAlignment)
void	setReference(Domain reference)
void	setReferenceAlignment(java.util.List<java.lang.Character> referenceAlignment)
void	setTransform(double[][] transform)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RMSDComponents

public RMSDComponents(Domain reference,
                      java.util.List<java.lang.Character> referenceAlignment,
                      Domain alternative,
                      java.util.List<java.lang.Character> alternativeAlignment,
                      double[][] transform)

Method Detail

getReference

public Domain getReference()

setReference

public void setReference(Domain reference)

getReferenceAlignment

public java.util.List<java.lang.Character> getReferenceAlignment()

setReferenceAlignment

public void setReferenceAlignment(java.util.List<java.lang.Character> referenceAlignment)

getAlternative

public Domain getAlternative()

setAlternative

public void setAlternative(Domain alternative)

getAlternativeAlignment

public java.util.List<java.lang.Character> getAlternativeAlignment()

setAlternativeAlignment

public void setAlternativeAlignment(java.util.List<java.lang.Character> alternativeAlignment)

getTransform

public double[][] getTransform()

setTransform

public void setTransform(double[][] transform)

getRMSD

public double getRMSD()