Index of /downloads/domak

	Name	Last modified	Size	Description
	Parent Directory		-
	LICENSE	2000-03-23 16:50	5.5K
	RELEASE_NOTES	2004-09-17 16:51	319
	domak_1.3.2.tar.gz	2004-09-17 16:44	702K
	old/	2004-12-20 12:08	-

Please read and understand the LICENCE file prior to use.

 DOMAK  is Copyright (1996) Asim S. Siddiqui and Geoffrey J. Barton

 All use of the DOMAK must cite:
 Siddiqui, A. S. and Barton, G. J., "Continuous and Discontinuous Domains: An
 Algorithm for the Automatic Generation of Reliable Protein Domain Definitions" 
 PROTEIN SCIENCE, 4:872-884 (1995).

Installation
------------

For historical reasons, the DOMAK code (written in C) is not as
portable as one would like it to be but the package has been
successfully built and tested using GCC on the following platforms:

Linux
Solaris
OS X
Cygwin
Windows XP (using MinGW)

The run_screens program in the bin/ subdirectory requires Perl.

N.B. If you are using Cygwin or MinGW use 'make win' instead of 'make'
in step (1) below. This is necessary because Windows executables have
'.exe' extensions.

(1) Type 'make' to build the executables and install them in the bin/
subdirectory. The default C compiler is cc; edit the Makefile in this
directory to specify another compiler if necessary.  

(2) Use 'make test' to test the executables. 

Please read the documentation in doc/

The files doc/LICENSE and doc/appendix_A are the text
files corresponding to the licence.

Contents of this directory:
---------------------------

Makefile             top-level Makefile
README               this file
contacts-src/        contains source for contacts programs
doc/                 documentation
domak-src/           domak source
include/             include file
libs/                contains libraries
screens/             contains source for screens
def/                 contains defaults
bin/                 binaries (pre-compiled or created by user)


AS May 1996
Changes by GJB March 2000
Changes by Tom Walsh and GJB September 2004