Uses of Interface
compbio.data.msa.SequenceAnnotation

Packages that use SequenceAnnotation

Package	Description
compbio.ws.client	A command line client and web services testing client for JAva Bioinformatics Analysis Web Services.
compbio.ws.server

Uses of SequenceAnnotation in compbio.ws.client

Methods in compbio.ws.client that return SequenceAnnotation

Modifier and Type	Method and Description
static SequenceAnnotation<AAConWS>	AAConClient.connect() Connects to a AACon web service by the host and the service name

Methods in compbio.ws.client with parameters of type SequenceAnnotation

Modifier and Type	Method and Description
(package private) static ScoreManager	AAConClient.analize(java.io.File file, SequenceAnnotation<AAConWS> wsproxy, Preset<AAConWS> preset, java.util.List<Option<AAConWS>> customOptions) Calculate conservation for sequences loaded from the file
(package private) static <T> ScoreManager	Jws2Client.analize(java.io.File file, SequenceAnnotation<T> wsproxy, Preset<T> preset, java.util.List<Option<T>> customOptions) Calculate conservation for sequences loaded from the file
(package private) static <T> ScoreManager	Jws2Client.analize(java.util.List<FastaSequence> fastalist, SequenceAnnotation<T> wsproxy, Preset<T> preset, java.util.List<Option<T>> customOptions) Calculate conservation for sequences loaded from a FASTA record list structure
private <T> boolean	WSTester.testDefaultAnalyse(java.util.List<FastaSequence> fastalist, SequenceAnnotation<T> wsproxy, Preset<T> preset, java.util.List<Option<T>> customOptions)
private <T> boolean	WSTester.testSequenceAnnotationWS(SequenceAnnotation<T> wservice, Services service)

Uses of SequenceAnnotation in compbio.ws.server

Classes in compbio.ws.server that implement SequenceAnnotation

Modifier and Type	Class and Description
class	AAConWS
class	DisemblWS
class	GlobPlotWS
class	IUPredWS
class	JronnWS
class	RNAalifoldWS