Uses of Class
compbio.data.sequence.RNAStructScoreManager

Packages that use RNAStructScoreManager

Package	Description
compbio.data.sequence	A data model for multiple sequence alignment web services and utility methods that work on the objects of this model.
compbio.runner	Utilities commonly used by all runners.
compbio.runner.structure

Uses of RNAStructScoreManager in compbio.data.sequence

Methods in compbio.data.sequence that return RNAStructScoreManager

Modifier and Type	Method and Description
static RNAStructScoreManager	RNAStructScoreManager.newInstance(java.util.List<java.lang.String> structs, java.util.List<java.util.TreeSet<Score>> data)
static RNAStructScoreManager	RNAStructReader.readRNAStructStream(java.io.InputStream stdout)
static RNAStructScoreManager	RNAStructReader.readRNAStructStream(java.io.InputStream stdout, java.io.InputStream alifold)

Uses of RNAStructScoreManager in compbio.runner

Methods in compbio.runner that return RNAStructScoreManager

Modifier and Type	Method and Description
static RNAStructScoreManager	RunnerUtil.readRNAStruct(java.lang.String workDirectory, java.lang.String structFile)

Uses of RNAStructScoreManager in compbio.runner.structure

Methods in compbio.runner.structure that return RNAStructScoreManager

Modifier and Type	Method and Description
RNAStructScoreManager	RNAalifold.getResults(java.lang.String workDirectory)