compbio.engine.client

Interface ConfiguredExecutable<T>

All Superinterfaces:

Executable<T>, PipedExecutable<T>

All Known Implementing Classes:

ConfExecutable

public interface ConfiguredExecutable<T>
extends Executable<T>, PipedExecutable<T>

Nested Class Summary

Nested classes/interfaces inherited from interface compbio.engine.client.Executable

Executable.ExecProvider

Method Summary

Modifier and Type	Method and Description
java.lang.String	getCommand(Executable.ExecProvider provider)
java.util.Map<java.lang.String,java.lang.String>	getEnvironment()
Executable.ExecProvider	getExecProvider()
Executable<T>	getExecutable()
CommandBuilder<T>	getParameters()
<V> V	getResults()
Executable.ExecProvider	getSupportedRuntimes()
java.lang.String	getTaskId()
java.lang.String	getWorkDirectory()
ConfiguredExecutable<?>	loadRunConfiguration(java.io.InputStream input)
boolean	saveRunConfiguration()
void	setWorkDirectory(java.lang.String workDirectory)

Methods inherited from interface compbio.engine.client.Executable

addParameters, getClusterJobSettings, getCreatedFiles, getError, getInput, getLimit, getLimits, getOutput, getParameters, getResults, loadRunConfiguration

Method Detail

getEnvironment

java.util.Map<java.lang.String,java.lang.String> getEnvironment()

getTaskId

java.lang.String getTaskId()

getCommand

java.lang.String getCommand(Executable.ExecProvider provider)
                     throws JobSubmissionException

Throws:

JobSubmissionException

getSupportedRuntimes

Executable.ExecProvider getSupportedRuntimes()

getWorkDirectory

java.lang.String getWorkDirectory()

setWorkDirectory

void setWorkDirectory(java.lang.String workDirectory)

getResults

<V> V getResults()
          throws ResultNotAvailableException

Throws:

ResultNotAvailableException

getExecutable

Executable<T> getExecutable()

getParameters

CommandBuilder<T> getParameters()

saveRunConfiguration

boolean saveRunConfiguration()
                      throws java.io.IOException

Throws:

java.io.IOException

loadRunConfiguration

ConfiguredExecutable<?> loadRunConfiguration(java.io.InputStream input)
                                      throws java.io.IOException

Throws:

java.io.IOException

getExecProvider

Executable.ExecProvider getExecProvider()