Uses of Class
compbio.metadata.WrongParameterException

Packages that use WrongParameterException

Package	Description
compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.metadata	A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.
compbio.ws.server

Uses of WrongParameterException in compbio.data.msa

Methods in compbio.data.msa that throw WrongParameterException

Modifier and Type	Method and Description
java.lang.String	MsaWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<T>> options) Align a list of sequences with options.
java.lang.String	SequenceAnnotation.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<T>> options) Analyse the sequences according to custom settings defined in options list.
java.lang.String	MsaWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<T> preset) Align a list of sequences with preset.
java.lang.String	SequenceAnnotation.presetAnalize(java.util.List<FastaSequence> sequences, Preset<T> preset) Analyse the sequences according to the preset settings.

Uses of WrongParameterException in compbio.metadata

Methods in compbio.metadata that throw WrongParameterException

Modifier and Type	Method and Description
java.util.List<Option<T>>	Preset.getArguments(RunnerConfig<T> rconfig) Converts list of options as String to type Option
void	Parameter.setDefaultValue(java.lang.String defaultVal)
void	Option.setDefaultValue(java.lang.String defaultVal) Sets one of the values defined in optionList as default.
void	Argument.setValue(java.lang.String defaultValue) Set default values for the parameter or an option
void	Option.setValue(java.lang.String dValue)

Uses of WrongParameterException in compbio.ws.server

Methods in compbio.ws.server that throw WrongParameterException

Modifier and Type	Method and Description
java.lang.String	ClustalOWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<ClustalO>> options)
java.lang.String	ClustalWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<ClustalW>> options)
java.lang.String	GLprobsWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<GLprobs>> options)
java.lang.String	MafftWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<Mafft>> options)
java.lang.String	MSAprobsWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<MSAprobs>> options)
java.lang.String	MuscleWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<Muscle>> options)
java.lang.String	ProbconsWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<Probcons>> options)
java.lang.String	TcoffeeWS.customAlign(java.util.List<FastaSequence> sequences, java.util.List<Option<Tcoffee>> options)
java.lang.String	AAConWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<AACon>> options)
java.lang.String	DisemblWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<Disembl>> options)
java.lang.String	GlobPlotWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<GlobPlot>> options)
java.lang.String	RNAalifoldWS.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<RNAalifold>> options)
java.lang.String	SequenceAnnotationService.customAnalize(java.util.List<FastaSequence> sequences, java.util.List<Option<T>> options)
java.lang.String	ClustalOWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<ClustalO> preset)
java.lang.String	ClustalWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<ClustalW> preset)
java.lang.String	GLprobsWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<GLprobs> preset)
java.lang.String	MafftWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Mafft> preset)
java.lang.String	MSAprobsWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<MSAprobs> preset)
java.lang.String	MuscleWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Muscle> preset)
java.lang.String	ProbconsWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Probcons> preset)
java.lang.String	TcoffeeWS.presetAlign(java.util.List<FastaSequence> sequences, Preset<Tcoffee> preset)
java.lang.String	AAConWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<AACon> preset)
java.lang.String	DisemblWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<Disembl> preset)
java.lang.String	GlobPlotWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<GlobPlot> preset)
java.lang.String	IUPredWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<IUPred> preset)
java.lang.String	RNAalifoldWS.presetAnalize(java.util.List<FastaSequence> sequences, Preset<RNAalifold> preset)
java.lang.String	SequenceAnnotationService.presetAnalize(java.util.List<FastaSequence> sequences, Preset<T> preset)