compbio.runner

Class OptionCombinator

java.lang.Object

compbio.runner.OptionCombinator

@Immutable
public final class OptionCombinator
extends java.lang.Object

This class solve the following problems. Given the RunnerConfig 1) generate a valid option string with all options and parameters in it 2) Permute all possible combinations of options order and parameters values

Author:

pvtroshin

Field Summary

Fields

Modifier and Type	Field and Description
private static org.apache.log4j.Logger	log
private static java.lang.String	MAXVALUE
private static java.lang.String	MINVALUE
private static java.util.Random	rand
private RunnerConfig<? extends Executable<?>>	rconfig

Constructor Summary

Constructors

Constructor and Description
OptionCombinator(RunnerConfig<? extends Executable<?>> rconfig)

Method Summary

Modifier and Type	Method and Description
java.util.List<java.lang.String>	argumentsToCommandString(java.util.List<? extends Option<?>> arguments)
static java.util.List<java.lang.String>	argumentsToCommandString(java.util.List<? extends Option<?>> arguments, RunnerConfig<? extends Executable<?>> rconfig)
java.util.Map<Parameter<?>,java.lang.String>	getAllConstrainedParametersWithBorderValues(boolean minValue)
java.util.Map<Parameter<?>,java.lang.String>	getAllConstrainedParametersWithRandomValues()
java.util.List<Option<?>>	getAllOptions()
java.util.List<Parameter<?>>	getAllParameters()
(package private) java.lang.String	getLowBorderValue(Parameter<?> param)
java.util.List<java.lang.String>	getOptionsAtRandom()
(package private) java.lang.String	getRandomValue(Parameter<?> param)
(package private) java.lang.String	getUpperBorderValue(Parameter<?> param)
(package private) static java.lang.String	getValue(Parameter<?> param)
java.util.List<java.lang.String>	optionsToCommandString(java.util.List<Option<?>> options)
(package private) static java.lang.String	optionToCommandString(Option<?> option)
java.util.List<java.lang.String>	parametersToCommandString(java.util.List<Parameter<?>> orderedList, java.util.Map<Parameter<?>,java.lang.String> prmValue)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

private static org.apache.log4j.Logger log

MINVALUE

private static final java.lang.String MINVALUE

See Also:

Constant Field Values

MAXVALUE

private static final java.lang.String MAXVALUE

See Also:

Constant Field Values

rand

private static final java.util.Random rand

rconfig

private final RunnerConfig<? extends Executable<?>> rconfig

Constructor Detail

OptionCombinator

public OptionCombinator(RunnerConfig<? extends Executable<?>> rconfig)

Method Detail

optionsToCommandString

public java.util.List<java.lang.String> optionsToCommandString(java.util.List<Option<?>> options)

getOptionsAtRandom

public java.util.List<java.lang.String> getOptionsAtRandom()

getAllOptions

public java.util.List<Option<?>> getAllOptions()

optionToCommandString

static java.lang.String optionToCommandString(Option<?> option)

getAllParameters

public java.util.List<Parameter<?>> getAllParameters()

argumentsToCommandString

public java.util.List<java.lang.String> argumentsToCommandString(java.util.List<? extends Option<?>> arguments)

argumentsToCommandString

public static java.util.List<java.lang.String> argumentsToCommandString(java.util.List<? extends Option<?>> arguments,
                                                                        RunnerConfig<? extends Executable<?>> rconfig)

parametersToCommandString

public java.util.List<java.lang.String> parametersToCommandString(java.util.List<Parameter<?>> orderedList,
                                                                  java.util.Map<Parameter<?>,java.lang.String> prmValue)

getAllConstrainedParametersWithBorderValues

public java.util.Map<Parameter<?>,java.lang.String> getAllConstrainedParametersWithBorderValues(boolean minValue)

getAllConstrainedParametersWithRandomValues

public java.util.Map<Parameter<?>,java.lang.String> getAllConstrainedParametersWithRandomValues()

getLowBorderValue

java.lang.String getLowBorderValue(Parameter<?> param)

getUpperBorderValue

java.lang.String getUpperBorderValue(Parameter<?> param)

getRandomValue

java.lang.String getRandomValue(Parameter<?> param)

getValue

static java.lang.String getValue(Parameter<?> param)