| Class | Description |
|---|---|
| Disembl |
DisEMBL.py smooth_frame peak_frame join_frame fold_coils fold_hotloops
fold_rem465 sequence_file print
'A default run would be: ./DisEMBL.py 8 8 4 1.2 1.4 1.2 fasta_file > out'
This version of DisEMBL is 1.4 (latest available for download in Feb 2011)
capable of outputting raw values
The values of the parameters are hard coded in DisEMBL.py script.
|
| GlobPlot |
./GlobPipe.py SmoothFrame DOMjoinFrame DOMpeakFrame DISjoinFrame DISpeakFrame
FASTAfile' Optimised for ELM: ./GlobPlot.py 10 8 75 8 8 sequence_file'
Webserver settings: ./GlobPlot.py 10 15 74 4 5 sequence_file'
Hard-coded values are 10 15 74 4 5.
|
| IUPred |
iupred sequenceFile
|
| Jronn |
Command line
java -Xmx512 -jar jronn_v3.jar -i=test_seq.txt -n=1 -o=out.txt -s=stat.out
|