Uses of Class
compbio.ws.client.Services

Packages that use Services

Package	Description
compbio.data.msa	Web Service interfaces for JAva Bioinformatics Analysis Web Services.
compbio.data.msa.jaxws
compbio.stat.collector
compbio.stat.servlet
compbio.stat.servlet.util
compbio.ws.client	A command line client and web services testing client for JAva Bioinformatics Analysis Web Services.
compbio.ws.server

Uses of Services in compbio.data.msa

Fields in compbio.data.msa with type parameters of type Services

Modifier and Type	Field and Description
(package private) java.util.Set<Services>	Category.services

Methods in compbio.data.msa that return types with arguments of type Services

Modifier and Type	Method and Description
java.util.Set<Services>	Category.getServices()
java.util.Set<Services>	RegistryWS.getSupportedServices() List of services that are functioning on the server.

Methods in compbio.data.msa with parameters of type Services

Modifier and Type	Method and Description
int	RegistryWS.getLastTested(Services service) Number of seconds since the last test.
java.util.Date	RegistryWS.getLastTestedOn(Services service) The date and time the service has been verified to work last time
java.lang.String	RegistryWS.getServiceDescription(Services service) Gives the description of the service.
boolean	RegistryWS.isOperating(Services service) Check whether a particular web service is working on this server
java.lang.String	RegistryWS.testService(Services service) Test a particular service

Constructor parameters in compbio.data.msa with type arguments of type Services

Constructor and Description
Category(java.lang.String name, java.util.Set<Services> services)

Uses of Services in compbio.data.msa.jaxws

Fields in compbio.data.msa.jaxws declared as Services

Modifier and Type	Field and Description
private Services	TestService.arg0
private Services	IsOperating.arg0
private Services	GetServiceDescription.arg0
private Services	GetLastTestedOn.arg0
private Services	GetLastTested.arg0

Fields in compbio.data.msa.jaxws with type parameters of type Services

Modifier and Type	Field and Description
private java.util.Set<Services>	GetSupportedServicesResponse._return
private java.util.Set<Services>	GetNonoperatedServicesResponse._return

Methods in compbio.data.msa.jaxws that return Services

Modifier and Type	Method and Description
Services	TestService.getArg0()
Services	IsOperating.getArg0()
Services	GetServiceDescription.getArg0()
Services	GetLastTestedOn.getArg0()
Services	GetLastTested.getArg0()

Methods in compbio.data.msa.jaxws that return types with arguments of type Services

Modifier and Type	Method and Description
java.util.Set<Services>	GetSupportedServicesResponse.getReturn()
java.util.Set<Services>	GetNonoperatedServicesResponse.getReturn()

Methods in compbio.data.msa.jaxws with parameters of type Services

Modifier and Type	Method and Description
void	TestService.setArg0(Services arg0)
void	IsOperating.setArg0(Services arg0)
void	GetServiceDescription.setArg0(Services arg0)
void	GetLastTestedOn.setArg0(Services arg0)
void	GetLastTested.setArg0(Services arg0)

Method parameters in compbio.data.msa.jaxws with type arguments of type Services

Modifier and Type	Method and Description
void	GetSupportedServicesResponse.setReturn(java.util.Set<Services> _return)
void	GetNonoperatedServicesResponse.setReturn(java.util.Set<Services> _return)

Uses of Services in compbio.stat.collector

Fields in compbio.stat.collector declared as Services

Modifier and Type	Field and Description
(package private) Services	JobStat.webService

Methods in compbio.stat.collector that return Services

Modifier and Type	Method and Description
private Services	JobDirectory.getService()
Services	JobStat.getWebService()

Methods in compbio.stat.collector with parameters of type Services

Modifier and Type	Method and Description
StatProcessor	StatProcessor.getSingleWSStat(Services webService)
static JobStat	JobStat.newInstance(Services webService, java.lang.String clusterJobId, java.lang.String jobname, long start, long finish, long inputSize, long resultSize, boolean isCancelled, boolean isCollected)
static JobStat	JobStat.newInstance(Services webService, java.lang.String clusterJobId, java.lang.String jobname, java.sql.Timestamp start, java.sql.Timestamp finish, long inputSize, long resultSize, boolean isCancelled, boolean isCollected)
java.util.List<JobStat>	StatDB.readData(java.sql.Timestamp from, java.sql.Timestamp to, Services wservice, java.lang.Boolean clusterOnly)

Constructors in compbio.stat.collector with parameters of type Services

Constructor and Description
JobStat(Services webService, java.lang.String clusterJobId, java.lang.String jobname, long start, long finish, long inputSize, long resultSize, boolean isCancelled, boolean isCollected)

Uses of Services in compbio.stat.servlet

Fields in compbio.stat.servlet declared as Services

Modifier and Type	Field and Description
(package private) Services	ServiceTestResult.service

Methods in compbio.stat.servlet that return Services

Modifier and Type	Method and Description
Services	ServiceTestResult.getService()

Constructors in compbio.stat.servlet with parameters of type Services

Constructor and Description
ServiceTestResult(Services service)

Uses of Services in compbio.stat.servlet.util

Fields in compbio.stat.servlet.util with type parameters of type Services

Modifier and Type	Field and Description
private java.util.Map<Services,StatProcessor>	StatCollection.allStat
private java.util.Map<Services,StatProcessor>	StatCollection.clusterStat
private java.util.Map<Services,StatProcessor>	StatCollection.localStat

Methods in compbio.stat.servlet.util that return types with arguments of type Services

Modifier and Type	Method and Description
java.util.Map<Services,StatProcessor>	StatCollection.getAllStat()
java.util.Map<Services,StatProcessor>	StatCollection.getClusterStat()
java.util.Map<Services,StatProcessor>	StatCollection.getLocalStat()

Method parameters in compbio.stat.servlet.util with type arguments of type Services

Modifier and Type	Method and Description
static Totals	Totals.sumStats(java.util.Map<Services,StatProcessor> stat)

Uses of Services in compbio.ws.client

Fields in compbio.ws.client declared as Services

Modifier and Type	Field and Description
(package private) Services	Services.ServiceInfo.service

Methods in compbio.ws.client that return Services

Modifier and Type	Method and Description
static Services	Services.getService(java.lang.String servName)
static Services	ServicesUtil.getServiceByJobDirectory(java.io.File jobdir)
static Services	ServicesUtil.getServiceByRunner(java.lang.Class<? extends Executable> class1)
private static Services	ServicesUtil.getServiceByRunnerName(java.lang.String name)
static Services	Services.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static Services[]	Services.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in compbio.ws.client with parameters of type Services

Modifier and Type	Method and Description
private <T> boolean	WSTester.checkService(JABAService wservice, Services service) Call most of web services functions and check the output
boolean	WSTester.checkService(Services service) Test JABA web service
private JABAService	WSTester.connect(java.lang.String host, Services service) Connects to a web service by the host and the service name web service type
static JABAService	Jws2Client.connect(java.lang.String host, Services service) Connects to a web service by the host and the service name web service type
private static java.lang.Class<? extends Executable<?>>	ServicesUtil.getServiceImpl(Services service)
private void	WSTester.reportResults(Services serv, boolean succeed)
private <T> boolean	WSTester.testDefaultAlignment(MsaWS<T> msaws, Services service) Align using default settings
private <T> boolean	WSTester.testMsaWS(MsaWS<T> msaws, Services service)
private <T> boolean	WSTester.testSequenceAnnotationWS(SequenceAnnotation<T> wservice, Services service)
static void	Jws2Client.testService(java.lang.String hostname, Services service, java.io.PrintWriter writer) Asks registry to test the service on the host hostname

Method parameters in compbio.ws.client with type arguments of type Services

Modifier and Type	Method and Description
static java.lang.String	Services.toString(java.util.Set<Services> services)

Constructors in compbio.ws.client with parameters of type Services

Constructor and Description
ServiceInfo(Services service, java.lang.String reference, java.lang.String version, java.lang.String moreinfo)

Uses of Services in compbio.ws.server

Fields in compbio.ws.server with type parameters of type Services

Modifier and Type	Field and Description
private static java.util.Map<Services,java.util.Date>	RegistryWS.nonoperating
private static java.util.Map<Services,java.util.Date>	RegistryWS.operating Stores tested and passed (the test) services and their testing time

Methods in compbio.ws.server that return types with arguments of type Services

Modifier and Type	Method and Description
java.util.Set<Services>	RegistryWS.getSupportedServices()

Methods in compbio.ws.server with parameters of type Services

Modifier and Type	Method and Description
int	RegistryWS.getLastTested(Services service)
java.util.Date	RegistryWS.getLastTestedOn(Services service) Can potentially return null if the service has not been tested yet.
java.lang.String	RegistryWS.getServiceDescription(Services service)
boolean	RegistryWS.isOperating(Services service)
(package private) static void	GAUtils.reportUsage(Services service)
(package private) static void	GAUtils.reportUsage(Services service, java.lang.String CLIENT_ADDRESS)
java.lang.String	RegistryWS.testService(Services service)