[Dundee Uni] [Jpred]

The Barton Group

A method for protein secondary structure prediction

Results from Predictions

Q3 Values for each sequence with DSSP as the definition model

Those sequences highlighted in RED have Q3's of below 60%

Name PHD DSC PRED MUL NNSSP Zpred CONS Quality Length Class Fold
1fc2c 65.12 72.09 41.86 51.16 72.09 46.51 65.12 0.00 43.00 All alpha Immunoglobulin-binding protein A, fragment B
1mrt 100.00 100.00 100.00 100.00 100.00 100.00 100.00 0.00 31.00 Small proteins Metallothionein
1ovoa 69.64 64.29 60.71 67.86 60.71 69.64 66.07 8.93 56.00 Small proteins Ovomucoid/PCI-1 like inhibitors
1ppt 100.00 97.22 100.00 77.78 100.00 69.44 100.00 0.00 36.00 Peptides Pancreatic polypeptide
1ubq 80.26 71.05 59.21 65.79 76.32 57.89 80.26 1.32 76.00 Alpha and beta (a+b) beta-Grasp
2mhu 90.00 90.00 90.00 90.00 90.00 90.00 90.00 0.00 30.00 Small proteins Metallothionein
2or1l 84.13 71.43 82.54 74.60 82.54 61.90 82.54 1.59 63.00 All alpha lambda repressor-like DNA-binding domains
2tgpi 87.93 72.41 68.97 79.31 65.52 74.14 72.41 0.00 58.00 Small proteins BPTI-like
3b5c 62.35 56.47 55.29 57.65 54.12 55.29 56.47 7.06 85.00 Alpha and beta (a+b) Cytochrome b5
9wgaa 59.65 57.89 59.65 59.65 59.65 59.65 59.65 0.00 171.00 Small proteins Small inhibitors, toxins, lectins
1eca 80.88 77.21 80.15 70.59 76.47 60.29 80.15 0.00 136.00 All alpha Globin-like
2cab 75.78 75.78 62.89 62.50 73.05 61.33 74.61 1.56 256.00 All beta Carbonic anhydrase
5lyz 65.12 60.47 63.57 70.54 62.02 60.47 64.34 4.65 129.00 Alpha and beta (a+b) Lysozyme-like Domain I
2hmza 80.70 83.33 74.56 76.32 68.42 72.81 77.19 0.00 114.00 All alpha Four-helical up-and-down bundle
1acx 81.48 73.15 68.52 70.37 72.22 64.81 80.56 0.00 108.00 All beta Immunoglobulin-like beta-sandwich
2alp 67.68 65.15 60.10 48.48 62.63 58.08 66.67 0.00 198.00 All beta Trypsin-like serine proteases Domain I
1cc5 72.29 56.63 78.31 69.88 72.29 53.01 73.49 0.00 83.00 All alpha Cytochrome c
3icb 85.33 78.67 86.67 90.67 82.67 82.67 85.33 0.00 75.00 All alpha EF-hand
1fdlh 73.39 73.85 66.97 66.97 72.48 62.84 72.02 1.83 218.00 All beta Immunoglobulin-like beta-sandwich
3cln 89.51 81.82 88.81 83.22 87.41 86.01 89.51 0.00 143.00 All alpha EF-hand
1il8a 78.87 63.38 83.10 67.61 80.28 66.20 78.87 0.00 71.00 Alpha and beta (a+b) Interleukin 8-like chemokines
2utga 84.29 87.14 82.86 68.57 82.86 68.57 84.29 0.00 70.00 All alpha Uteroglobin-like
1csei 71.43 73.02 76.19 77.78 74.60 73.02 73.02 4.76 63.00 Alpha and beta (a+b) CI-2 family of serine protease inhibitors
3ebx 80.65 62.90 72.58 70.97 67.74 66.13 77.42 0.00 62.00 Small proteins Snake toxin-like
7rsa 68.55 67.74 66.13 69.35 67.74 70.97 69.35 3.23 124.00 Alpha and beta (a+b) Ribonuclease A-like
6cpp 75.80 67.41 74.57 69.38 75.06 60.99 75.80 2.47 405.00 All alpha Cytochrome P450
9apia 71.68 53.98 59.88 54.28 64.01 55.46 64.60 6.78 339.00 Multi-domain (alpha and beta) Serpins
1fkf 72.90 71.96 58.88 62.62 72.90 57.01 74.77 1.87 107.00 Alpha and beta (a+b) FKBP-like
1gdj 87.58 83.66 77.78 69.93 82.35 74.51 86.27 0.00 153.00 All alpha Globin-like
7cata 72.09 65.66 65.66 68.47 70.48 60.44 71.89 2.21 498.00 All alpha Heme-linked catalases N-terminal fragment
2pcy 80.81 76.77 70.71 70.71 79.80 59.60 80.81 0.00 99.00 All beta Cupredoxins
5hvpa 81.82 68.69 66.67 60.61 62.63 59.60 76.77 0.00 99.00 All beta Acid proteases Domain I
1lap 74.84 69.65 70.89 67.78 70.48 65.07 74.22 5.61 481.00 Alpha and beta (a/b) Leucine aminopeptidase, N-terminal domain
1sh1 62.50 54.17 54.17 64.58 60.42 62.50 60.42 0.00 48.00 Small proteins Defensin-like
1wsyb 73.77 68.05 70.39 67.53 72.73 60.00 72.47 1.56 385.00 Alpha and beta (a/b) Tryptophan synthase, beta-subunit Domain I
2ltnb 80.85 74.47 38.30 36.17 61.70 48.94 76.60 0.00 47.00 All beta ConA-like lectins/glucanases
2sns 75.18 70.92 76.60 80.85 74.47 64.54 76.60 1.42 141.00 All beta OB-fold
1s01 71.27 71.27 68.73 68.36 67.27 64.73 71.64 2.55 275.00 Alpha and beta (a/b) Subtilases
4rhv1 73.63 68.50 71.79 65.93 71.43 61.54 73.99 2.56 273.00 All beta Viral coat and capsid proteins
1r092 62.75 58.43 61.96 61.18 66.67 63.92 62.35 4.31 255.00 All beta Viral coat and capsid proteins
2fxb 77.78 74.07 72.84 74.07 75.31 55.56 79.01 2.47 81.00 Alpha and beta (a+b) Ferredoxin-like
4cms 69.06 67.50 57.50 57.50 61.56 57.19 67.19 2.19 320.00 All beta Acid proteases Domain I
6cpa 80.46 72.96 76.87 68.73 79.48 67.10 80.78 1.30 307.00 Alpha and beta (a/b) Zn-dependent exopeptidases
1tnfa 75.00 76.97 64.47 64.47 69.74 75.66 76.32 1.32 152.00 All beta Tumor necrosis factor
2paba 74.56 65.79 64.04 50.00 55.26 50.00 71.05 0.00 114.00 All beta Prealbumin-like
2tsca 70.83 66.29 65.91 61.74 69.32 59.09 68.94 1.14 264.00 Alpha and beta (a+b) Thymidylate synthase
1mcpl 74.09 72.73 67.27 63.64 76.82 56.36 75.91 0.00 220.00 All beta Immunoglobulin-like beta-sandwich
4xiaa 77.86 74.30 73.28 72.26 77.35 69.21 77.86 2.04 393.00 Alpha and beta (a/b) beta/alpha (TIM)-barrel
3cd4 69.10 63.48 56.74 55.62 68.54 47.19 68.54 0.00 178.00 All beta Immunoglobulin-like beta-sandwich
1wsya 86.29 84.27 83.06 80.65 87.10 72.18 87.50 0.00 248.00 Alpha and beta (a/b) beta/alpha (TIM)-barrel
1rbp 72.99 69.54 56.90 51.15 56.32 48.28 71.26 0.00 174.00 All beta Lipocalins
3rnt 76.92 72.12 71.15 62.50 73.08 65.38 75.96 1.92 104.00 Alpha and beta (a+b) Microbal ribonucleases
5cytr 66.02 61.17 81.55 67.96 69.90 52.43 68.93 0.00 103.00 All alpha Cytochrome c
2aat 76.01 70.96 77.53 69.44 78.79 64.14 75.76 2.78 396.00 Alpha and beta (a/b) PLP-dependent transferases Domain I
1fnd 70.27 69.26 71.28 65.54 71.28 63.18 72.30 2.36 296.00 All beta Reductase/elongation factor common domain
1l58 73.17 72.56 67.68 59.76 70.73 61.59 71.95 4.27 164.00 Alpha and beta (a+b) Lysozyme-like Domain I
2ak3a 80.97 71.68 77.88 69.03 82.74 70.80 82.30 0.44 226.00 Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
3blm 77.43 66.15 75.10 64.59 72.76 61.87 76.26 0.39 257.00 Alpha and beta (a+b) beta-Lactamase/D-ala carboxypeptidase Domain I
1fxia 77.08 83.33 72.92 80.21 76.04 63.54 80.21 3.12 96.00 Alpha and beta (a+b) beta-Grasp
2ccya 82.68 81.89 75.59 74.02 86.61 80.31 85.83 0.79 127.00 All alpha Four-helical up-and-down bundle
6dfr 75.97 69.48 62.99 62.99 72.73 56.49 75.97 0.65 154.00 Alpha and beta (a/b) Dihydrofolate reductases
9insb 83.33 80.00 80.00 73.33 43.33 70.00 83.33 0.00 30.00 Small proteins Insulin-like
1lmb3 75.86 73.56 75.86 67.82 82.76 71.26 77.01 0.00 87.00 All alpha lambda repressor-like DNA-binding domains
2gn5 64.37 58.62 67.82 72.41 70.11 50.57 65.52 0.00 87.00 All beta OB-fold
2gcr 73.41 75.14 69.94 65.32 65.90 71.68 75.14 2.31 173.00 All beta Crystallins/protein S
1tgsi 66.07 67.86 64.29 69.64 64.29 67.86 67.86 10.71 56.00 Small proteins Ovomucoid/PCI-1 like inhibitors
5er2e 70.00 66.06 59.39 61.82 67.88 60.00 68.48 3.64 330.00 All beta Acid proteases Domain I
1fdx 70.37 74.07 68.52 72.22 72.22 62.96 74.07 0.00 54.00 Alpha and beta (a+b) Ferredoxin-like
4cpv 85.19 77.78 81.48 85.19 77.78 73.15 83.33 0.00 108.00 All alpha EF-hand
3gapa 71.63 71.63 72.60 65.87 68.75 61.54 71.15 0.00 208.00 All beta Double-stranded beta-helix, jelly-roll domain
4sgbi 80.39 78.43 76.47 80.39 80.39 60.78 80.39 0.00 51.00 Small proteins Ovomucoid/PCI-1 like inhibitors
8adh 72.46 65.51 69.79 68.98 74.06 60.70 72.46 2.94 374.00 All beta GroES-like
6hir 83.67 83.67 83.67 83.67 79.59 87.76 83.67 0.00 49.00 Small proteins Thrombin inhibitors
1rhd 76.11 66.89 77.47 71.33 74.74 65.53 76.79 1.37 293.00 Alpha and beta (a/b) Rhodanese
1gd1o 72.16 64.07 70.06 62.87 69.76 58.68 73.35 1.50 334.00 Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
5ldh 67.57 66.07 70.87 66.37 68.47 60.96 68.77 3.00 333.00 Alpha and beta (a/b) NAD(P)-binding Rossmann-fold domains
2glsa 74.57 70.51 72.86 65.81 72.22 58.97 76.07 0.64 468.00 Alpha and beta (a+b) Glutamine synthetase smaller domain
1crn 41.30 58.70 45.65 41.30 45.65 39.13 45.65 8.70 46.00 Small proteins Crambin-like
3pgm 73.04 71.74 76.96 74.35 83.91 65.22 76.96 0.87 230.00 Alpha and beta (a/b) Phosphoglycerate mutase-like
4pfk 79.31 73.98 78.06 70.85 80.25 64.89 82.13 0.63 319.00 Alpha and beta (a/b) Phosphofructokinase Domain I
2gbp 78.64 69.58 77.99 68.61 82.20 70.55 81.23 0.32 309.00 Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
1bbpa 74.57 67.63 66.47 60.69 71.10 57.23 74.57 1.73 173.00 All beta Lipocalins
1azu 73.81 73.02 70.63 69.84 69.05 43.65 76.19 0.00 126.00 All beta Cupredoxins
4sdha 82.07 81.38 67.59 60.00 83.45 67.59 84.14 0.00 145.00 All alpha Globin-like
7icd 74.88 73.67 76.09 69.57 78.99 65.22 78.74 2.42 414.00 Alpha and beta (a/b) Isocitrate & isopropylmalate dehydrogenases
8abp 65.90 66.56 60.00 56.72 71.15 58.03 68.52 5.57 305.00 Alpha and beta (a/b) Periplasmic binding protein-like I Domain I
2ltna 81.22 82.87 80.66 75.14 80.66 75.69 84.53 0.55 181.00 All beta ConA-like lectins/glucanases
6tmne 58.54 65.19 63.92 57.91 60.76 58.54 62.03 6.01 316.00 Alpha and beta (a+b) Metzincins, catalytic (N-terminal) domain
2fox 78.99 78.26 80.43 72.46 77.54 65.22 81.88 0.00 138.00 Alpha and beta (a/b) Flavodoxin-like
3tima 77.51 76.31 75.50 74.30 73.09 70.28 80.32 1.61 249.00 Alpha and beta (a/b) beta/alpha (TIM)-barrel
2i1b 69.28 80.39 54.25 52.94 71.24 48.37 73.86 5.88 153.00 All beta beta-Trefoil
1bmv2 64.44 68.18 64.97 65.24 65.51 55.61 66.31 3.48 374.00 All beta Viral coat and capsid proteins
3hmga 59.45 63.41 62.50 61.89 61.89 55.18 63.72 3.96 328.00 All beta Segmented RNA-genome viruses' proteins
4rhv3 77.97 79.66 79.24 80.51 80.51 68.22 82.20 2.12 236.00 All beta Viral coat and capsid proteins
2wrpr 79.81 82.69 67.31 62.50 85.58 68.27 85.58 0.96 104.00 All alpha Trp repressor
6cts 77.62 80.42 75.06 66.43 77.16 61.07 80.89 3.03 429.00 All alpha Citrate synthase Domain I
4gr1 70.07 66.38 72.67 62.47 76.14 56.40 73.54 2.82 461.00 Alpha and beta (a/b) FAD (also NAD)-binding motif
2phh 62.92 60.87 65.47 57.54 67.01 50.90 65.47 3.84 391.00 Multi-domain (alpha and beta) p-Hydroxybenzoate hydroxylase as a single domain
2sodb 78.15 79.47 82.12 72.85 84.11 69.54 82.78 0.00 151.00 All beta Immunoglobulin-like beta-sandwich
2rspa 68.70 69.57 60.00 55.65 67.83 57.39 71.30 0.87 115.00 All beta Acid proteases Domain I
6acn 71.22 69.23 72.41 59.42 68.70 60.74 73.74 2.65 753.00 Alpha and beta (a/b) Aconitase, Domain I
2stv 67.93 65.76 57.61 57.61 66.85 50.54 69.57 7.61 184.00 All beta Viral coat and capsid proteins
1gp1a 67.76 70.49 71.58 63.39 69.95 67.76 73.22 3.83 183.00 Alpha and beta (a/b) Thioredoxin-like
9pap 65.09 65.57 73.11 70.75 68.87 70.75 69.81 7.08 212.00 Alpha and beta (a+b) Cysteine proteinases Domain I
1paz 76.67 73.33 75.83 53.33 82.50 48.33 80.83 0.00 120.00 All beta Cupredoxins
3ait 70.27 75.68 72.97 68.92 70.27 68.92 75.68 0.00 74.00 All beta alpha-Amylase inhibitor
1pyp 74.64 69.29 74.29 71.43 83.21 56.79 79.29 1.43 280.00 All beta OB-fold
3hmgb 67.43 62.86 63.43 56.00 66.29 51.43 69.71 4.00 175.00 Membrane and cell surface proteins and peptides Influenza hemagglutinin (stalk)
2cyp 61.43 68.94 68.26 72.01 69.62 67.58 67.24 5.80 293.00 All alpha Heme-dependent peroxidases Domain I
1bmv1 74.59 78.92 73.51 70.81 81.08 67.57 80.54 1.62 185.00 All beta Viral coat and capsid proteins
4bp2 64.96 55.56 48.72 56.41 49.57 61.54 57.26 5.13 117.00 All alpha Phospholipase A2
4ts1a 69.09 71.29 66.25 67.51 76.97 62.46 75.08 2.84 317.00 Alpha and beta (a/b) ATP pyrophosphatases
1hip 58.82 54.12 67.06 62.35 61.18 50.59 61.18 2.35 85.00 Small proteins HIPIP (high potential iron protein)
1cdta 75.00 55.00 80.00 70.00 71.67 60.00 76.67 0.00 60.00 Small proteins Snake toxin-like
9apib 86.11 80.56 80.56 80.56 91.67 86.11 91.67 0.00 36.00 Multi-domain (alpha and beta) Serpins
2mev4 46.55 55.17 93.10 75.86 67.24 56.90 55.17 0.00 58.00 All beta Viral coat and capsid proteins
4rxn 64.81 61.11 61.11 61.11 64.81 57.41 66.67 0.00 54.00 Small proteins Rubredoxin-like
3cla 70.89 67.14 74.18 62.91 70.89 56.34 77.93 2.82 213.00 Alpha and beta (a/b) CoA-dependent acetyltransferases
4rhv4 50.00 47.50 60.00 60.00 55.00 32.50 55.00 2.50 40.00 All beta Viral coat and capsid proteins
1etu 73.45 78.53 76.84 70.62 79.10 53.11 79.10 0.56 177.00 Alpha and beta (a/b) P-loop containing nucleotide triphosphate hydrolases
256ba 75.47 81.13 53.77 70.75 87.74 72.64 83.96 2.83 106.00 All alpha Four-helical up-and-down bundle
1bds 69.77 74.42 72.09 79.07 74.42 60.47 74.42 0.00 43.00 Small proteins Defensin-like
2lhb 73.83 85.91 77.18 70.47 84.56 65.77 85.23 1.34 149.00 All alpha Globin-like
4cpai 75.68 81.08 67.57 75.68 75.68 72.97 81.08 0.00 37.00 Small proteins Small inhibitors, toxins, lectins
2tmvp 60.39 73.38 58.44 64.29 78.57 34.42 73.38 3.25 154.00 All alpha Four-helical up-and-down bundle
1cbh 72.22 75.00 75.00 72.22 80.56 75.00 83.33 0.00 36.00 Small proteins Small inhibitors, toxins, lectins

Barton group home page
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