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Bioinformatics Research
The primary emphasis of the group's research  is on the computational analysis and prediction of the  function and three-dimensional structure of proteins from their amino acid sequence.   However, we also work on broad computational problems in biology, from DNA sequencing and mass spectrometry, to protein structure analysis.


Great BBSRC funded post-doc opportunity!
See the press release - read the job ad and
further details - application deadline 15/Jan/2010.


Geoff_Barton_Hot_Paper




bioinformatics


Read about new opportunities to collaborate with us via the Data Analysis Group (DAG)

You can read an introduction and  summary of some recent work on the College of Life Sciences website, while here you can  browse our publications, software and databases.

 

What is a Professor? A Reader? A Fellow? If you would like to learn more about careers in UK academic scientific research, try this guide for help.

 

News!

Jan 2010: Congratulations to
Christelle Robert
on the successful
defense of her Thesis
15/1/10.

Jan 2010: Jalview paper rated "Hot" by Thompson Essential Science Indicators.  Read Geoff's  interview here.

Dec 2009:
 Post-doc position in bioinformatics available.  Funded by BBSRC for three years.  See here for the job advert and here for further particulars.  A press release about the grant is here.  Closing date 15th Jan 2010.

Oct 2009:
 Two miRNA analysis papers published!  See: here for links.

Oct 2009:
 Farewell to Cathy Stephenson.  We thank Cathy for  her efforts over the last four years and wish her all the best in the future.

Oct 2009:
 Farewell to Ian Overton.  We wish Ian good luck in starting his own research group at Edinburgh.

Aug 2009:
Press Release about BBSRC Grant joint with Gordon Simpson to apply  massively parallel sequencing to study alternative polyadenylation.

July 2009:
 Welcome to Peter Troshin - new Postdoc in the group!

May 2009:
Read the new Data Analysis Group (DAG) web pages to find out how we can now collaborate on more wet/dry research projects.

January 2009:
Paper describing the latest advances in the Jalview multiple alignment editor and analysis workbench published in Bioinformatics.


 

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This site was last updated: Monday, 18 January, 2010

Geoff Barton, Bioinformatics and Computational Biology Research, University of Dundee, Scotland, UK

 

Quick Access to Group Software and Servers.
More...

Jalview

Multiple alignment editing analysis and much more!

Alscript

Multiple alignment formatting for analysis and publication

JPred
JNet

Protein Secondary structure prediction at over 80% accuracy

Kinomer

Protein kinase classifcation HMM library and database

PIPS

Predicted protein-protein interactions

AMAS

Sub-family analysis

Smerfs

beta Functional site prediction by multiple methods

TarO

 Easy to use sequence analysis pipeline for protein target selection and more..

GOtcha

Gene function prediction

StAMP

Multiple Protein structure Alignment

SNAPPI

Database of  3D protein
domain-domain interactions

XTAL

Predict protein
crystallisability by the OB-Score,  ParCrys and Xannpred methods.

For a complete list of Group software, databases, webservers, and download instructions please  see this page