Matrix scoring and alignment method |
Q3 accuracy (%) |
BLOSUM62 profile CLUSTALW |
70.8 |
Frequency profile CLUSTALW |
71.6 |
Frequency profile PSIBLAST |
72.1 |
HMMER Profile CLUSTALW |
74.4 |
HMMER Profile Iterative Alignment (see Figure 2) |
74.3 |
PSSM PSIBLAST |
75.2 |
Numerical average of HMMER and PSSM PSIBLAST |
76.5 |
Jury/No Jury network (see Figures 3 and 1) |
76.9 |