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Method 2 - a two segment scan (Figure 6b)

A is made up of two segments, and , formed by cutting the chain at four points, , , and . The split value between and must show them to be correlated when compared with MSV. B can be made of up to three segments, depending on the postions of the boundaries. The split value is calculated for all possible segment 's formed by varying , , and . The maximum split value is stored, together with the corresponding values of , , and , called , , and , which define and . The maximum split value is compared with MSV and if and are not correlated, the parent domain is split at this point. goes on to form a two segment child domain.



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