There is a wealth of well written and high quality teaching resources available online. The purpose of this page is two fold.
- Firstly to direct students on courses I teach to course specific materials. Although the course specific stuff can also found in the University of Dundee myDundee VLE system I a making it available here.
- Secondly to provide links to resources I find useful myself.
Encode
ENCODE tools |
Various tools for accessing and analysing ENCODE data |
ENCODE example |
An example using rtracklayer and GenomicRanges for a very simple analyse of an ENCODE data |
Other Resources
knitr package |
Website for the R package knitr for producing documentation with embedded code |
rmarkdown package |
Website for the R package rmarkdown nice and easy way to produce literate programming documents |
Reproducible Research |
Link to a CRAN page on reproducible research resources in R |
Literate programming |
Wikipedia description of the aims of literate programming “The main idea is to regard a program as a communication to human beings rather than as a set of instructions to a computer.” Knuth. |