StatCVS - Directory src/jalview/commands/

Lines of Code

src/jalview/commands/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	81 (100.0%)	4096 (100.0%)	50.5
jprocter	38 (46.9%)	2160 (52.7%)	56.8
andrew	36 (44.4%)	1518 (37.1%)	42.1
amwaterhouse	7 (8.6%)	418 (10.2%)	59.7

Most Recent Commits

jprocter 2010-04-30 10:29

jalview 2.5 release banner

100 lines of code changed in:

src/jalview/commands: ChangeCaseCommand.java (+12 -13), CommandI.java (+12 -13), EditCommand.java (+12 -13), OrderCommand.java (+12 -13), RemoveGapColCommand.java (+14 -15), RemoveGapsCommand.java (+14 -15), SlideSequencesCommand.java (+12 -13), TrimRegionCommand.java (+12 -13)

jprocter 2009-06-08 11:37

apply gpl development license

16 lines of code changed in:

src/jalview/commands: ChangeCaseCommand.java (+2 -2), CommandI.java (+2 -2), EditCommand.java (+2 -2), OrderCommand.java (+2 -2), RemoveGapColCommand.java (+2 -2), RemoveGapsCommand.java (+2 -2), SlideSequencesCommand.java (+2 -2), TrimRegionCommand.java (+2 -2)

jprocter 2008-09-04 14:34

merge from 2_4_Release branch

408 lines of code changed in:

src/jalview/commands: ChangeCaseCommand.java (+21 -16), CommandI.java (+5 -5), EditCommand.java (+254 -253), OrderCommand.java (+10 -10), RemoveGapColCommand.java (+38 -27), RemoveGapsCommand.java (+35 -25), SlideSequencesCommand.java (+24 -31), TrimRegionCommand.java (+21 -27)

jprocter 2008-08-26 10:38

bugfix todo for the 'edit sequence' command

22 lines of code changed in:

src/jalview/commands: EditCommand.java (+22 -1)

jprocter 2007-06-17 14:01

recovery of identical dataset sequence object on undo (rather than creation of a new ds sequence with re-inserted residues)

61 lines of code changed in:

src/jalview/commands: EditCommand.java (+61 -26)

andrew 2007-05-04 11:31

Annotations do not extend when full alignment is adjusted

8 lines of code changed in:

src/jalview/commands: EditCommand.java (+8 -12)

jprocter 2007-05-02 13:24

refactored do and undo() method to take array of alignments for operations that result in hide/show of alignment annotation

834 lines of code changed in:

src/jalview/commands: ChangeCaseCommand.java (+133 -133), CommandI.java (+30 -30), EditCommand.java (+112 -21), OrderCommand.java (+62 -62), RemoveGapColCommand.java (+106 -106), RemoveGapsCommand.java (+120 -120), SlideSequencesCommand.java (+93 -93), TrimRegionCommand.java (+178 -178)

jprocter 2007-04-27 09:51

bugfix for deleted annotation undo

1 lines of code changed in:

src/jalview/commands: EditCommand.java (+1 -1)

jprocter 2007-04-25 12:47

AlignmentAnnotation: added annotation score attribute and allowed for annotation[] array to be null

5 lines of code changed in:

src/jalview/commands: EditCommand.java (+5 -1)

jprocter 2007-04-19 16:21

ensure edit command gapChar is updated and used for padding when no alignmentI reference is available

11 lines of code changed in:

src/jalview/commands: EditCommand.java (+11 -10)

amwaterhouse 2007-04-19 15:42

REPLACE added to edit command

93 lines of code changed in:

src/jalview/commands: EditCommand.java (+93 -29)

andrew 2007-04-18 13:32

Pad gaps when annotation editing

8 lines of code changed in:

src/jalview/commands: EditCommand.java (+8 -1)

jprocter 2007-04-17 12:05

paste/cut now adds or removes associated AlignmentAnnotation.

702 lines of code changed in:

src/jalview/commands: EditCommand.java (+702 -650)

andrew 2007-02-27 13:27

jmol added

93 lines of code changed in:

src/jalview/commands: SlideSequencesCommand.java (new 93)

andrew 2007-02-07 15:04

Formatting

363 lines of code changed in:

src/jalview/commands: ChangeCaseCommand.java (+17 -6), CommandI.java (+5 -5), EditCommand.java (+218 -174), OrderCommand.java (+40 -40), RemoveGapColCommand.java (+15 -12), RemoveGapsCommand.java (+27 -19), TrimRegionCommand.java (+41 -26)

andrew 2007-02-05 16:11

Alignment editing columns 0 and 1 fixed

6 lines of code changed in:

src/jalview/commands: EditCommand.java (+6 -3)

andrew 2007-02-05 14:40

Fixed bug in trim right annotation adjust

51 lines of code changed in:

src/jalview/commands: EditCommand.java (+51 -7)

andrew 2007-02-05 11:46

Fixed bug in trim right annotation adjust

7 lines of code changed in:

src/jalview/commands: EditCommand.java (+7 -2)

andrew 2007-02-02 17:34

getWidth -1 for trim right

1 lines of code changed in:

src/jalview/commands: TrimRegionCommand.java (+1 -1)

andrew 2007-02-02 17:34

check annotation size when cutting

9 lines of code changed in:

src/jalview/commands: EditCommand.java (+9 -6)

(15 more)