Activity by Clock Time
| Directory | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| Totals | 4700 (100.0%) | 254565 (100.0%) | 54.1 |
| src/jalview/gui/ | 646 (13.7%) | 51999 (20.4%) | 80.4 |
| src/jalview/binding/ | 367 (7.8%) | 39981 (15.7%) | 108.9 |
| src/jalview/appletgui/ | 246 (5.2%) | 27302 (10.7%) | 110.9 |
| src/com/stevesoft/pat/ | 77 (1.6%) | 17521 (6.9%) | 227.5 |
| src/jalview/io/ | 252 (5.4%) | 13694 (5.4%) | 54.3 |
| src/jalview/datamodel/ | 263 (5.6%) | 8617 (3.4%) | 32.7 |
| utils/jalopy/docs/ | 207 (4.4%) | 7856 (3.1%) | 37.9 |
| src/jalview/jbgui/ | 93 (2.0%) | 7534 (3.0%) | 81.0 |
| src/jalview/util/ | 70 (1.5%) | 7096 (2.8%) | 101.3 |
| src/jalview/io/vamsas/ | 65 (1.4%) | 5070 (2.0%) | 78.0 |
| help/html/ | 68 (1.4%) | 4655 (1.8%) | 68.4 |
| src/jalview/analysis/ | 92 (2.0%) | 4628 (1.8%) | 50.3 |
| src/jalview/bin/ | 82 (1.7%) | 4305 (1.7%) | 52.5 |
| help/html/features/ | 156 (3.3%) | 4279 (1.7%) | 27.4 |
| src/jalview/schemes/ | 87 (1.9%) | 3769 (1.5%) | 43.3 |
| src/jalview/datamodel/xdb/embl/ | 65 (1.4%) | 3765 (1.5%) | 57.9 |
| src/jalview/ws/jws1/ | 12 (0.3%) | 3752 (1.5%) | 312.6 |
| src/jalview/schemabinding/version2/ | 340 (7.2%) | 3421 (1.3%) | 10.0 |
| src/vamsas/objects/simple/ | 80 (1.7%) | 3161 (1.2%) | 39.5 |
| src/jalview/ws/jws2/ | 48 (1.0%) | 3096 (1.2%) | 64.5 |
| src/MCview/ | 56 (1.2%) | 2793 (1.1%) | 49.8 |
| help/html/menus/ | 74 (1.6%) | 2673 (1.1%) | 36.1 |
| src/jalview/ws/ | 147 (3.1%) | 2444 (1.0%) | 16.6 |
| / | 57 (1.2%) | 2269 (0.9%) | 39.8 |
| src/jalview/commands/ | 38 (0.8%) | 2160 (0.8%) | 56.8 |
| src/jalview/ext/jmol/ | 15 (0.3%) | 1915 (0.8%) | 127.6 |
| src/org/jibble/epsgraphics/ | 3 (0.1%) | 1736 (0.7%) | 578.6 |
| src/ext/vamsas/ | 58 (1.2%) | 1469 (0.6%) | 25.3 |
| src/jalview/math/ | 6 (0.1%) | 1257 (0.5%) | 209.5 |
| src/jalview/structure/ | 39 (0.8%) | 1205 (0.5%) | 30.8 |
| help/html/colourSchemes/ | 51 (1.1%) | 1043 (0.4%) | 20.4 |
| help/html/webServices/ | 34 (0.7%) | 889 (0.3%) | 26.1 |
| help/html/calculations/ | 36 (0.8%) | 790 (0.3%) | 21.9 |
| schemas/ | 33 (0.7%) | 764 (0.3%) | 23.1 |
| utils/InstallAnywhere/ | 17 (0.4%) | 672 (0.3%) | 39.5 |
| src/jalview/ws/dbsources/ | 87 (1.9%) | 634 (0.2%) | 7.2 |
| help/html/misc/ | 9 (0.2%) | 494 (0.2%) | 54.8 |
| src/uk/ac/ebi/www/ | 21 (0.4%) | 489 (0.2%) | 23.2 |
| src/com/stevesoft/pat/wrap/ | 6 (0.1%) | 468 (0.2%) | 78.0 |
| help/html/vamsas/ | 9 (0.2%) | 430 (0.2%) | 47.7 |
| utils/ | 17 (0.4%) | 366 (0.1%) | 21.5 |
| src/jalview/schemabinding/version2/descriptors/ | 295 (6.3%) | 354 (0.1%) | 1.2 |
| src/jalview/ws/jws2/dm/ | 4 (0.1%) | 342 (0.1%) | 85.5 |
| utils/eclipse/ | 2 (0.0%) | 286 (0.1%) | 143.0 |
| help/html/io/ | 13 (0.3%) | 259 (0.1%) | 19.9 |
| src/jalview/ws/params/ | 9 (0.2%) | 239 (0.1%) | 26.5 |
| doc/ | 21 (0.4%) | 148 (0.1%) | 7.0 |
| resources/ | 11 (0.2%) | 109 (0.0%) | 9.9 |
| help/ | 23 (0.5%) | 98 (0.0%) | 4.2 |
| help/html/editing/ | 3 (0.1%) | 73 (0.0%) | 24.3 |
| utils/jalopy/ | 3 (0.1%) | 71 (0.0%) | 23.6 |
| .externalToolBuilders/ | 3 (0.1%) | 53 (0.0%) | 17.6 |
| src/jalview/api/ | 5 (0.1%) | 49 (0.0%) | 9.8 |
| src/vamsas/ | 3 (0.1%) | 23 (0.0%) | 7.6 |
| src/uk/ac/ebi/www/picr/AccessionMappingService/ | 16 (0.3%) | 0 (0.0%) | 0.0 |
| src/uk/ac/ebi/picr/model/ | 16 (0.3%) | 0 (0.0%) | 0.0 |
| src/org/biojava/dasobert/feature/ | 24 (0.5%) | 0 (0.0%) | 0.0 |
| src/org/biojava/dasobert/eventmodel/ | 9 (0.2%) | 0 (0.0%) | 0.0 |
| src/org/biojava/dasobert/dasregistry/ | 9 (0.2%) | 0 (0.0%) | 0.0 |
| src/org/biojava/dasobert/das2/io/ | 3 (0.1%) | 0 (0.0%) | 0.0 |
| src/org/biojava/dasobert/das2/ | 5 (0.1%) | 0 (0.0%) | 0.0 |
| src/org/biojava/dasobert/das/ | 11 (0.2%) | 0 (0.0%) | 0.0 |
| src/jalview/ws/seqfetcher/ | 18 (0.4%) | 0 (0.0%) | 0.0 |
| src/jalview/ws/ebi/ | 5 (0.1%) | 0 (0.0%) | 0.0 |
| src/jalview/ws/dbsources/das/ | 4 (0.1%) | 0 (0.0%) | 0.0 |
| src/ | 2 (0.0%) | 0 (0.0%) | 0.0 |
| lib/ | 45 (1.0%) | 0 (0.0%) | 0.0 |
| dist/ | 1 (0.0%) | 0 (0.0%) | 0.0 |
| appletlib/ | 8 (0.2%) | 0 (0.0%) | 0.0 |
reflect the state of a failed Job in the GUI (e.g. trying to align protein seqs with a nucleotide parameter set)
10 lines of code changed in:
patch to prevent NPE - which occurs if no features are available (see JAL-650)
0 lines of code changed in:
clean the dist directory before copying Jars
7 lines of code changed in:
update jmol
0 lines of code changed in:
added colour by label to feature type colourspec and gff statement to allow mixed jalview colour specs and gff feature specs
154 lines of code changed in:
reinstated the splitpanes with better size placement, and made tooltips button labels more helpful
29 lines of code changed in:
fix the javac issue for JmolApplet references in application build
312 lines of code changed in:
update Jmol jar ref
1 lines of code changed in:
appletgui should ve excluded from normal application build
1 lines of code changed in:
streamlined app and applet jmol console + event handling via component listener
65 lines of code changed in:
refactored to remove App reference in Applet (JAL-638)
61 lines of code changed in:
refactored to remove App reference in Applet (JAL-638)
37 lines of code changed in:
patched Jmol and code for embedding JmolAppConsole in a JPanel (JAL-638)
1 lines of code changed in:
patched Jmol and code for embedding JmolAppConsole in a JPanel (JAL-638)
142 lines of code changed in:
jabaws, not jaba
1 lines of code changed in:
threaded off ws menu building to avoid initial pause when services are discovered
108 lines of code changed in:
properly report invalid jobs (server doesn't support service, seuqence set too big/wide, invalid input parameters) in a pop up dialog
217 lines of code changed in:
early bail out for long urls, and threaded off group url construction: JAL-402
104 lines of code changed in:
wrap preset description tooltips
3 lines of code changed in:
remove duplicate host URLs in service list when not indexing services by host
7 lines of code changed in:
(1211 more)