StatCVS - Directory src/jalview/structure/

Lines of Code

src/jalview/structure/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
Totals	51 (100.0%)	1806 (100.0%)	35.4
jprocter	39 (76.5%)	1205 (66.7%)	30.8
andrew	12 (23.5%)	601 (33.3%)	50.0

Most Recent Commits

jprocter 2010-08-31 17:16

fixed various null pointer exceptions that occur when PDB files imported into Jmol which do not map to a sequence

48 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+48 -35)

jprocter 2010-08-27 12:32

patch re http://issues.jalview.org/browse/JAL-583 : hack to prevent chains being mapped to sequences with different chainspecs

26 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+26 -8)

jprocter 2010-08-20 13:31

check that we have mappings before trying to broadcast mouseovers involving them

4 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+4 -1)

jprocter 2010-06-29 17:22

upgrading structure/sequence binding so that a structure view can contain many pdb files

25 lines of code changed in:

src/jalview/structure: StructureListener.java (+1 -1), StructureSelectionManager.java (+24 -12)

jprocter 2010-06-11 10:54

patch for JAL-556 - more robust mapping of sequence to structure sequence with correct substitution matrix

3 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+3 -1)

jprocter 2010-04-30 10:29

jalview 2.5 release banner

111 lines of code changed in:

src/jalview/structure: SelectionListener.java (+25 -20), SelectionSource.java (+15 -17), SequenceListener.java (+12 -13), StructureListener.java (+12 -13), StructureMapping.java (+12 -13), StructureSelectionManager.java (+35 -28), VamsasListener.java (changed)

jprocter 2009-06-08 11:44

apply gpl development license

42 lines of code changed in:

src/jalview/structure: SelectionListener.java (+16 -1), SelectionSource.java (+18), SequenceListener.java (+2 -2), StructureListener.java (+2 -2), StructureMapping.java (+2 -2), StructureSelectionManager.java (+2 -2), VamsasListener.java (changed)

jprocter 2008-11-12 11:54

jdk1.2 compatibility

1 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+1 -1)

jprocter 2008-11-12 11:25

javadoc

31 lines of code changed in:

src/jalview/structure: SelectionListener.java (+19 -18), SelectionSource.java (+12 -11)

jprocter 2008-11-12 11:14

new listener/sender for selection events

59 lines of code changed in:

src/jalview/structure: SelectionListener.java (new 18), SelectionSource.java (new 11), StructureSelectionManager.java (+30)

jprocter 2008-09-04 14:33

merge from 2_4_Release branch

145 lines of code changed in:

src/jalview/structure: SequenceListener.java (+5 -5), StructureListener.java (+34 -32), StructureMapping.java (+99 -100), StructureSelectionManager.java (+7 -7), VamsasListener.java (changed)

jprocter 2008-03-08 02:52

first hack to get true DNA and Sequence highlighting from Structure mouseovers

61 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+61 -32)

jprocter 2007-11-12 16:26

javadoc

6 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+6 -3)

jprocter 2007-07-13 16:09

pickmanager on sequence and alignment position, vamsas pick broadcast and refactor for new DBRef management and generalised source and entry retrieval mechanism for references and cross references

46 lines of code changed in:

src/jalview/structure: SequenceListener.java (+30 -30), StructureSelectionManager.java (+16 -8)

jprocter 2007-06-17 14:04

enable mouseover between DNA coding regions and translated peptide location and broadcast to vamsas session.

245 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+245 -101), VamsasListener.java (new)

andrew 2007-05-15 16:35

SequenceListener highlights SearchResults, not just a single sequence

13 lines of code changed in:

src/jalview/structure: SequenceListener.java (+1 -1), StructureSelectionManager.java (+12 -3)

andrew 2007-05-04 14:55

remove system.out

0 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (-3)

andrew 2007-05-01 13:25

Can specify PDB chain to map sequence to - only used by applet so far

12 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+12 -6)

andrew 2007-04-27 15:40

ColourByStructure not ready yet

9 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+9 -20)

jprocter 2007-04-25 12:50

transfer of residue numbering as alignment annotation

2 lines of code changed in:

src/jalview/structure: StructureSelectionManager.java (+2 -1)

(4 more)