StatCVS - Directory src/jalview/ws/dbsources/

Lines of Code

src/jalview/ws/dbsources/ Lines of Code

Developers

Author	Changes	Lines of Code	Lines per Change
jprocter	87 (100.0%)	634 (100.0%)	7.2

Most Recent Commits

jprocter 2010-04-30 10:29

jalview 2.5 release banner

20 lines of code changed in:

src/jalview/ws/dbsources: DasSequenceSource.java (changed), EbiFileRetrievedProxy.java (changed), EmblCdsSouce.java (changed), EmblSource.java (changed), EmblXmlSource.java (changed), GeneDbSource.java (changed), Pdb.java (changed), Pfam.java (changed), PfamFull.java (changed), PfamSeed.java (changed), Uniprot.java (+20 -19), UnprotName.java (changed)

jprocter 2009-06-19 10:49

regex validator for uniprot

3 lines of code changed in:

src/jalview/ws/dbsources: Uniprot.java (+3 -2)

jprocter 2009-06-12 16:43

more ID validation

0 lines of code changed in:

src/jalview/ws/dbsources: EmblCdsSouce.java (changed), EmblSource.java (changed)

jprocter 2009-06-08 11:41

apply gpl development license

2 lines of code changed in:

src/jalview/ws/dbsources: DasSequenceSource.java (changed), EbiFileRetrievedProxy.java (changed), EmblCdsSouce.java (changed), EmblSource.java (changed), EmblXmlSource.java (changed), GeneDbSource.java (changed), Pdb.java (changed), Pfam.java (changed), PfamFull.java (changed), PfamSeed.java (changed), Uniprot.java (+2 -2), UnprotName.java (changed)

jprocter 2008-12-19 15:34

wsdbfetch parameter change again (uniprotkb is dbname for uniprot)

3 lines of code changed in:

src/jalview/ws/dbsources: Uniprot.java (+3 -1)

jprocter 2008-12-04 10:22

minimise exceptions for bad uniprot ids

4 lines of code changed in:

src/jalview/ws/dbsources: Uniprot.java (+4 -2)

jprocter 2008-11-04 13:29

implemented embl validation properly

0 lines of code changed in:

src/jalview/ws/dbsources: EmblCdsSouce.java (changed)

jprocter 2008-11-04 13:18

implemented embl validation properly

0 lines of code changed in:

src/jalview/ws/dbsources: EmblSource.java (changed)

jprocter 2008-09-04 14:33

merge from 2_4_Release branch

48 lines of code changed in:

src/jalview/ws/dbsources: DasSequenceSource.java (changed), EbiFileRetrievedProxy.java (changed), EmblCdsSouce.java (changed), EmblSource.java (changed), EmblXmlSource.java (changed), GeneDbSource.java (changed), Pdb.java (changed), Pfam.java (changed), PfamFull.java (changed), PfamSeed.java (changed), Uniprot.java (+48 -27), UnprotName.java (changed)

jprocter 2008-08-26 10:10

pdb xrefs added as dbrefs and as PDB file links

270 lines of code changed in:

src/jalview/ws/dbsources: Uniprot.java (+270 -270)

jprocter 2008-08-15 11:00

xrefs retrieved from Uniprot

13 lines of code changed in:

src/jalview/ws/dbsources: Uniprot.java (+13)

jprocter 2008-08-04 15:16

pfam seed and full alignment retrieval and nicer ordering of sequence db sources in combobox

0 lines of code changed in:

src/jalview/ws/dbsources: Pfam.java (changed), PfamFull.java (new), PfamSeed.java (new)

jprocter 2008-08-01 14:19

updated jalview version of dasobert 1.53e client and added Das Sequence Source discovery to the sequence fetcher

1 lines of code changed in:

src/jalview/ws/dbsources: DasSequenceSource.java (new), EmblSource.java (changed), Pdb.java (changed), Pfam.java (changed), Uniprot.java (+1 -1)

jprocter 2008-07-31 11:11

quick fix for the new uniprot name schema - description line for retrieved uniprot sequences gets the first recommendedName.fullName string found in the entry.

5 lines of code changed in:

src/jalview/ws/dbsources: Uniprot.java (+5 -2)

jprocter 2008-05-26 11:24

Uniprot is not actually a multi-acc capable source any more. see bug https://mantis.lifesci.dundee.ac.uk/view.php?id=32464

2 lines of code changed in:

src/jalview/ws/dbsources: Uniprot.java (+2 -2)

jprocter 2008-02-22 15:37

explicit quote of chaincode in errror message

0 lines of code changed in:

src/jalview/ws/dbsources: Pdb.java (changed)

jprocter 2007-12-21 15:13

uniprotxml format comment (ebi changed service parameter)

1 lines of code changed in:

src/jalview/ws/dbsources: Uniprot.java (+1)

jprocter 2007-12-21 15:03

sequence db fetcher and db reference validation/annotation transfer

38 lines of code changed in:

src/jalview/ws/dbsources: EmblCdsSouce.java (changed), EmblSource.java (changed), EmblXmlSource.java (changed), GeneDbSource.java (new), Pdb.java (changed), Pfam.java (changed), Uniprot.java (+38 -5)

jprocter 2007-11-16 15:39

typo

0 lines of code changed in:

src/jalview/ws/dbsources: EbiFileRetrievedProxy.java (changed)

jprocter 2007-11-16 15:06

refactored ebi soap client and AbstractSequenceFetcher machinery to their own packages.

1 lines of code changed in:

src/jalview/ws/dbsources: EmblSource.java (changed), EmblXmlSource.java (changed), Pdb.java (changed), Pfam.java (changed), Uniprot.java (+1 -1), UnprotName.java (new)

(5 more)