Lines of Code
[root]/src/jalview/datamodel/xdb/embl
| Author | Changes | Lines of Code | Lines per Change |
|---|---|---|---|
| jprocter | 65 (100.0%) | 3765 (100.0%) | 57.9 |
jalview 2.5 release banner
164 lines of code changed in:
fix to cope with EMBL records containing a CDS fragment (proper start/end codon positioning and trimming)
90 lines of code changed in:
parent db references and mappings added to retrieved sequences, debugging of codon_start>1 for coding region and stop codon inclusion/exclusion detection
77 lines of code changed in:
apply gpl development license
18 lines of code changed in:
merge from 2_4_Release branch
849 lines of code changed in:
CDS segment index
1 lines of code changed in:
fix parsing of embl entries like S75919 which have feature properties with no values
11 lines of code changed in:
friendlier sequence names for protein products
8 lines of code changed in:
args for emblfile parser main method
11 lines of code changed in:
todo comments
4 lines of code changed in:
debugging cross references and duplicate sequence db refs
4 lines of code changed in:
debugged mappings and translated sequence recovery
230 lines of code changed in:
prototype DBRef and Feature Type semantics (for annotating coding regions and distinguishing between DNA and peptide sequence databases)
6 lines of code changed in:
castor mapping unmarshalling logging
3 lines of code changed in:
feature locations are retrieved by associated accession string and public debug report request in case embl parsing fails
403 lines of code changed in:
feature locations are retrieved by associated accession string
53 lines of code changed in:
updated mapping for EMBL_Services_V1.1.xsd and tested with basic CDS feature detection.
56 lines of code changed in:
ascii type
883 lines of code changed in:
basic support for multi-exon CDS features
176 lines of code changed in:
generalised feature attribute parsing slightly (no embl specs to work from yet)
7 lines of code changed in:
(1 more)