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| Packages that use compbio.data.sequence | |
|---|---|
| compbio.data.msa | Web Service interfaces for JAva Bioinformatics Analysis Web Services. |
| compbio.data.sequence | A data model for multiple sequence alignment web services and utility methods that work on the objects of this model. |
| compbio.metadata | A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project. |
| Classes in compbio.data.sequence used by compbio.data.msa | |
|---|---|
| Alignment
Multiple sequence alignment. |
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| FastaSequence
A FASTA formatted sequence. |
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| ScoreManager
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| Classes in compbio.data.sequence used by compbio.data.sequence | |
|---|---|
| Alignment
Multiple sequence alignment. |
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| AlignmentMetadata
Alignment metadata e.g. |
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| ConservationMethod
Enumeration listing of all the supported methods. |
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| DisorderMethod
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| FastaSequence
A FASTA formatted sequence. |
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| Program
The list of programmes that can produce alignments |
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| Range
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| Score
A value class for AACon annotation results storage. |
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| ScoreManager
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| ScoreManager.ScoreHolder
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| SMERFSConstraints
Enumeration defining two constraints for SMERFS columns score calculation. |
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| UnknownFileFormatException
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| Classes in compbio.data.sequence used by compbio.metadata | |
|---|---|
| FastaSequence
A FASTA formatted sequence. |
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