Hierarchy For All Packages

Package Hierarchies:

compbio.data.msa, compbio.data.sequence, compbio.metadata, compbio.ws.client

Class Hierarchy

• java.lang.Object
  • compbio.ws.client.AAConClient
  • compbio.data.sequence.Alignment
  • compbio.data.sequence.AlignmentMetadata
  • compbio.data.msa.Category
  • compbio.metadata.ChunkHolder
  • compbio.data.sequence.ClustalAlignmentUtil
  • compbio.data.sequence.FastaReader (implements java.util.Iterator<E>)
  • compbio.data.sequence.FastaSequence
  • compbio.ws.client.IOHelper
  • compbio.ws.client.Jws2Client
  • compbio.metadata.Limit<T>
  • compbio.metadata.LimitsManager<T>
  • compbio.ws.client.MetadataHelper
  • compbio.metadata.Option<T> (implements compbio.metadata.Argument<T>)
    • compbio.metadata.Parameter<T>
  • compbio.metadata.Preset<T>
  • compbio.metadata.PresetManager<T>
  • compbio.data.sequence.Range (implements java.lang.Comparable<T>)
  • compbio.metadata.RunnerConfig<T>
  • compbio.data.sequence.Score (implements java.lang.Comparable<T>)
  • compbio.data.sequence.ScoreManager
  • compbio.data.sequence.ScoreManager.ScoreHolder
  • compbio.data.sequence.SequenceUtil
  • compbio.ws.client.ServicesUtil
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • compbio.metadata.JobExecutionException
      • compbio.metadata.JobSubmissionException
        • compbio.metadata.LimitExceededException
        • compbio.metadata.UnsupportedRuntimeException
      • compbio.metadata.ResultNotAvailableException
      • compbio.data.sequence.UnknownFileFormatException
      • compbio.metadata.WrongParameterException
  • compbio.metadata.ValueConstrain
  • compbio.ws.client.WSTester

Interface Hierarchy

• compbio.metadata.Argument<T>
• compbio.data.msa.JABAService
  • compbio.data.msa.MsaWS<T> (also extends compbio.data.msa.JManagement, compbio.data.msa.Metadata<T>)
  • compbio.data.msa.RegistryWS
  • compbio.data.msa.SequenceAnnotation<T> (also extends compbio.data.msa.JManagement, compbio.data.msa.Metadata<T>)
• compbio.data.msa.JManagement
  • compbio.data.msa.MsaWS<T> (also extends compbio.data.msa.JABAService, compbio.data.msa.Metadata<T>)
  • compbio.data.msa.SequenceAnnotation<T> (also extends compbio.data.msa.JABAService, compbio.data.msa.Metadata<T>)
• compbio.data.msa.Metadata<T>
  • compbio.data.msa.MsaWS<T> (also extends compbio.data.msa.JABAService, compbio.data.msa.JManagement)
  • compbio.data.msa.SequenceAnnotation<T> (also extends compbio.data.msa.JABAService, compbio.data.msa.JManagement)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • compbio.data.sequence.Program
    • compbio.ws.client.Services
    • compbio.metadata.JobStatus
    • compbio.metadata.ValueConstrain.Type
    • compbio.data.sequence.DisorderMethod
    • compbio.data.sequence.ConservationMethod
    • compbio.data.sequence.SMERFSConstraints