compbio.engine.cluster.drmaa
Class ClusterSession

java.lang.Object
  compbio.engine.cluster.drmaa.ClusterSession

public final class ClusterSession
extends java.lang.Object

Field Summary

static java.lang.String

JOBID

Method Summary

void	close()
static ClusterJobId	getClusterJobId(java.lang.String taskId)
int	getJobStatus(ClusterJobId jobId) Apparently completed jobs cannot be found! If this happened most likely that the job is not running any more and Most likely it has been cancelled, finished or failed.
static java.lang.String	getJobStatus(int status) Deprecated.
ConfiguredExecutable<?>	getResults(java.lang.String taskId)
org.ggf.drmaa.Session	getSession()
static StatisticManager	getStatistics(org.ggf.drmaa.JobInfo status)
void	removeJob(java.lang.String taskId)
org.ggf.drmaa.JobInfo	waitForJob(java.lang.String taskId)
org.ggf.drmaa.JobInfo	waitForJob(java.lang.String jobId, long waitingTime)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

JOBID

public static final java.lang.String JOBID

See Also:

Constant Field Values

Method Detail

getSession

public org.ggf.drmaa.Session getSession()

close

public void close()

removeJob

public void removeJob(java.lang.String taskId)

waitForJob

public org.ggf.drmaa.JobInfo waitForJob(java.lang.String taskId)
                                 throws org.ggf.drmaa.DrmaaException,
                                        java.io.IOException

Throws:

org.ggf.drmaa.DrmaaException

java.io.IOException

getClusterJobId

public static ClusterJobId getClusterJobId(java.lang.String taskId)
                                    throws java.io.IOException

Throws:

java.io.IOException

waitForJob

public org.ggf.drmaa.JobInfo waitForJob(java.lang.String jobId,
                                        long waitingTime)
                                 throws org.ggf.drmaa.DrmaaException,
                                        java.io.IOException

Throws:

org.ggf.drmaa.DrmaaException

java.io.IOException

getResults

public ConfiguredExecutable<?> getResults(java.lang.String taskId)
                                   throws org.ggf.drmaa.DrmaaException,
                                          ResultNotAvailableException

Throws:

org.ggf.drmaa.DrmaaException

ResultNotAvailableException

getStatistics

public static StatisticManager getStatistics(org.ggf.drmaa.JobInfo status)
                                      throws org.ggf.drmaa.DrmaaException

Throws:

org.ggf.drmaa.DrmaaException

getJobStatus

public int getJobStatus(ClusterJobId jobId)
                 throws org.ggf.drmaa.DrmaaException,
                        org.ggf.drmaa.InvalidJobException

Apparently completed jobs cannot be found! If this happened most likely that the job is not running any more and Most likely it has been cancelled, finished or failed.

Throws:

org.ggf.drmaa.InvalidJobException - if the job is no longer in the queue or running. basically it will throw this exception for all finished or cancelled jobs

org.ggf.drmaa.DrmaaException

getJobStatus

@Deprecated
public static java.lang.String getJobStatus(int status)
                                     throws org.ggf.drmaa.DrmaaException

Deprecated.

Method for getting jobs status by quering the cluster, It returns status in therms of a Sessions, not a JobStatus Should only be used for testing!

Parameters:

status -

Returns:

job status

Throws:

org.ggf.drmaa.DrmaaException