compbio.ws.client
Class AAConClient

java.lang.Object
  compbio.ws.client.AAConClient

public class AAConClient
extends java.lang.Object

A command line client for AACon web service

Version:

1.0

Author:

pvtroshin

Method Summary

static SequenceAnnotation<AAConWS>	connect() Connects to a AACon web service by the host and the service name
static void	main(java.lang.String[] args) Starts command line client, if no parameters are supplied prints help.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

connect

public static SequenceAnnotation<AAConWS> connect()
                                           throws javax.xml.ws.WebServiceException

Connects to a AACon web service by the host and the service name

Returns:

AlignmentAnnotation

Throws:

javax.xml.ws.WebServiceException - if cannot connect to a web service

main

public static void main(java.lang.String[] args)

Starts command line client, if no parameters are supplied prints help.

Parameters:

args - Usage: ACTION [OPTIONS] -i= - full path to fasta or Clustal formatted alignment file -parameters - lists parameters supported by web service -presets - lists presets supported by web service -limits - lists web services limits. Please note that if input file is specified other actions are ignored OPTIONS: (only for use with -i action): -r= - name of the preset to use -o= - full path to the file where to write results -f= - the name of the file with the list of parameters to use. Please note that -r and -f options cannot be used together. Conservation is calculated with either a preset or parameters from the file, but not both!