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getConservation(List<FastaSequence>, boolean, Set<ConservationMethod>, ExecutorService) - Static method in class compbio.conservation.ConservationCalculator

Calculates the conservation by all the methods defined by ConservationMethod enumeration apart from SMERFS.

getFormat(String) - Static method in enum compbio.conservation.Format

Converts from String format name to enum Format

getSMERFSScore(Alignment, int, SMERFSConstraints, float, boolean, ExecutorService) - Static method in class compbio.conservation.ConservationCalculator

Calculating the SMERFS score with custom parameters

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