Program

java.lang.Object
- java.lang.Enum<Program>
- - compbio.data.sequence.Program

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<Program>
```
public enum Program
extends java.lang.Enum<Program>
```
The list of programmes that can produce alignments

Author:

pvtroshin

Enum Constant Summary

Enum Constants
Enum Constant and Description
`CLUSTAL` ClustalW
`ClustalO` ClustalO
`GLprobs` GLprobs
`Mafft` Mafft
`MSAprobs` MSAprobs
`Muscle` Muscle
`Probcons` Probcons
`Tcoffee` Tcoffee

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static Program`	`valueOf(java.lang.String name)` Returns the enum constant of this type with the specified name.
`static Program[]`	`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Enum Constant Detail
  - CLUSTAL
```
public static final Program CLUSTAL
```
    ClustalW
  - ClustalO
```
public static final Program ClustalO
```
    ClustalO
  - Mafft
```
public static final Program Mafft
```
    Mafft
  - Muscle
```
public static final Program Muscle
```
    Muscle
  - Tcoffee
```
public static final Program Tcoffee
```
    Tcoffee
  - Probcons
```
public static final Program Probcons
```
    Probcons
  - MSAprobs
```
public static final Program MSAprobs
```
    MSAprobs
  - GLprobs
```
public static final Program GLprobs
```
    GLprobs
- Method Detail
  - values
```
public static Program[] values()
```
    Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
```
for (Program c : Program.values())
    System.out.println(c);
```
    Returns:
    
    an array containing the constants of this enum type, in the order they are declared
  - valueOf
```
public static Program valueOf(java.lang.String name)
```
    Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
    
    Parameters:
    
    name - the name of the enum constant to be returned.
    
    Returns:
    
    the enum constant with the specified name
    
    Throws:
    
    java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
    
    java.lang.NullPointerException - if the argument is null

Enum Program

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Detail

CLUSTAL

ClustalO

Mafft

Muscle

Tcoffee

Probcons

MSAprobs

GLprobs

Method Detail

values

valueOf