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Evidence of Interaction Between SNRPG and WDR17

The interaction score between SNRPG and WDR17 is 6.11.

This page provides the details about the evidence that was used to calculate the interaction Score between the two proteins

The Scores that are listed with each module are based on the interaction score where that module provides the only source of evidence. The final Score is the integration of all the sources of evidence.

FeatureEvidenceScore (?)
Gene Expression

N/A

 N/A
Orthology N/A N/A
Domains Domains present in SNRPG and WDR17:
Domains in SNRPGDomains in WDR17
IPR001163 Small nuclear ribonucleoprotein (Sm protein)
IPR010920 Small nuclear-like ribonucleoprotein
IPR006649 snRNP domain
IPR001680 G-protein beta WD-40 repeat

The Chi square scores for co-occurrence of domains that are present in SNRPG and WDR17 are listed below.

Domain 1Domain 2Chi Square
IPR010920 Small nuclear-like ribonucleoprotein IPR001680 G-protein beta WD-40 repeat 22.3132
IPR006649 snRNP domain IPR001680 G-protein beta WD-40 repeat 19.3621
IPR001163 Small nuclear ribonucleoprotein (Sm protein) IPR001680 G-protein beta WD-40 repeat 18.7041

The background colour of the table refers to:

  • Blue Domain is only present in SNRPG
  • Yellow Domain is only present in WDR17
  • Green Domain is present in both SNRPG and WDR17

 0.027
Post-translational Modifications No PTMs were used in calculating likelihood of interaction
Localisation

Protein: SNRPG

LocalisationReference
Nucleus HPRD
Cytoplasm HPRD

Protein: WDR17

No localisation data was used in calculating likelihood of interaction
Transitive Score

The common interactors between SNRPG and WDR17 that are considered by the Transitive module are listed below.

The Scores listed are the values used by the transitive module to calculate the final interaction Score between SNRPG andWDR17. The values listed are therefore not the final Score value for the listed interactions.

With a Score value ≥0.025 , SNRPG has 256 interactors and WDR17 has 58 interactors of which there are 18 common interactors.

Common InteractorName of Common InteractorScore for SNRPG-Interactor (?)Score for WDR17-Interactor (?)
SNRPD1 SNRPD1: Small nuclear ribonucleoprotein Sm D1 2.07E3 0.027
SNRPD3 SNRPD3: Small nuclear ribonucleoprotein Sm D3 2.07E3 0.027
SNRPD2 SNRPD2, SNRPD1: Small nuclear ribonucleoprotein Sm D2 691.00 0.027
LSM5 LSM5: U6 snRNA-associated Sm-like protein LSm5 691.00 0.027
LSM4 LSM4: U6 snRNA-associated Sm-like protein LSm4 691.00 0.027
SNRPE SNRPE: Small nuclear ribonucleoprotein E 8.73 0.027
SF3B3 N/A 3.89 0.027
SNRPB SNRPB, COD, SNRPB1: Small nuclear ribonucleoprotein-associated proteins B and B' 2.91 0.027
LSM3 LSM3, MDS017: U6 snRNA-associated Sm-like protein LSm3 2.60 0.027
LSM7 LSM7: U6 snRNA-associated Sm-like protein LSm7 2.60 0.027
LSM8 LSM8: U6 snRNA-associated Sm-like protein LSm8 2.60 0.027
SNRPF SNRPF, PBSCF: Small nuclear ribonucleoprotein F 2.60 0.027
LSM2 LSM2, C6orf28, G7b: U6 snRNA-associated Sm-like protein LSm2 1.22 0.027
LSM6 LSM6: U6 snRNA-associated Sm-like protein LSm6 1.22 0.027
LSM1 LSM1, CASM: U6 snRNA-associated Sm-like protein LSm1 1.22 0.027
LSM10 LSM10: U7 snRNA-associated Sm-like protein LSm10 0.237 0.027
LSM11 LSM11: U7 snRNA-associated Sm-like protein LSm11 0.237 0.027
SNRPN HCERN3, SNRPN, SMN: Small nuclear ribonucleoprotein-associated protein N 0.158 0.027
0.572
Total Score 6.11