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Evidence of Interaction Between SNRPG and PRPF40B

The interaction score between SNRPG and PRPF40B is 16.20.

This page provides the details about the evidence that was used to calculate the interaction Score between the two proteins

The Scores that are listed with each module are based on the interaction score where that module provides the only source of evidence. The final Score is the integration of all the sources of evidence.

FeatureEvidenceScore (?)
Gene Expression

N/A

 N/A
Orthology
OrganismSNRPG OrthologuePRPF40B OrthologueExperiment
AccessionInparalog ScoreAccessionInparalog Score
bakers yeast YFL017W-A 1 YKL012W 0.424
  • Other
  • AffinityCaptureMS

Get References From PubMed
worm Q9N4G9 1 P34600 1
fly Q9VXE0 1 Q9VQK5 0.246

The Inparalog Score is calculated by InParanoid

The experiment type Other refers to techniques other than Y2H, MS, Immunoprecipitation, SurfacePlasmonResonance, XrayDiffraction, Xlinking, CompetitionBinding, Immunofluorescence, GelRetardationAssay, AffinityChromatography, InVitroBinding, InVitro, InVivo, FarWestern, pullDown, AffinityCaptureMS, EpistaticMiniArrayProfile, AffinityCaptureWestern, BiochemicalActivity, CoCrystalStructure, FRET, ReconstitutedComplex, CoLocalization, CoPurification or CoFractionation.

 0.119
Domains No domains were used in calculating likelihood of interaction 1.48E-3
Post-translational Modifications No PTMs were used in calculating likelihood of interaction
Localisation

Protein: SNRPG

LocalisationReference
Nucleus HPRD
Cytoplasm HPRD

Protein: PRPF40B

No localisation data was used in calculating likelihood of interaction
Transitive Score

The common interactors between SNRPG and PRPF40B that are considered by the Transitive module are listed below.

The Scores listed are the values used by the transitive module to calculate the final interaction Score between SNRPG andPRPF40B. The values listed are therefore not the final Score value for the listed interactions.

With a Score value ≥0.025 , SNRPG has 256 interactors and PRPF40B has 27 interactors of which there are 15 common interactors.

Common InteractorName of Common InteractorScore for SNRPG-Interactor (?)Score for PRPF40B-Interactor (?)
SNRPD1 SNRPD1: Small nuclear ribonucleoprotein Sm D1 2.07E3 0.071
SNRPD3 SNRPD3: Small nuclear ribonucleoprotein Sm D3 2.07E3 0.071
SNRPD2 SNRPD2, SNRPD1: Small nuclear ribonucleoprotein Sm D2 691.00 0.071
PRP19 PRPF19, NMP200, PRP19, SNEV: Pre-mRNA-processing factor 19 25.60 0.039
SNRPF SNRPF, PBSCF: Small nuclear ribonucleoprotein F 2.60 0.071
PRPF8 PRPF8, PRPC8: Pre-mRNA-processing-splicing factor 8 1.84 0.119
SNRP70 SNRP70, RNPU1Z, RPU1, U1AP1: U1 small nuclear ribonucleoprotein 70 kDa 0.657 0.390
LUC7L N/A 0.593 0.119
PRPF40A PRPF40A, FBP11, HSPC225, FLAF1, FNBP3, HYPA: Pre-mRNA-processing factor 40 homol 0.593 0.119
SNRPEL1 RP11-390F4.1-001: Small nuclear ribonucleoprotein polypeptide E-like protein 1. 0.354 0.071
CROP CROP, CREAP1, O48: Cisplatin resistance-associated overexpressed protein 0.300 0.064
CGI-48 UTP18, WDR50, CDABP0061, CGI-48: U3 small nucleolar RNA-associated protein 18 ho 0.123 0.071
LUC7L2 N/A 0.119 0.064
LOC645472 hCG_23490: Uncharacterized protein ENSP00000329276 0.119 0.064
LOC119358 similar to small nuclear ribonucleoprotein D2 0.071 0.038
0.572
Total Score 16.20