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Evidence of Interaction Between SNRPG and SNRPA1

The interaction score between SNRPG and SNRPA1 is 3.36.

This page provides the details about the evidence that was used to calculate the interaction Score between the two proteins

The Scores that are listed with each module are based on the interaction score where that module provides the only source of evidence. The final Score is the integration of all the sources of evidence.

FeatureEvidenceScore (?)
Gene Expression

Pearson's Correlation between SNRPG and SNRPA1 = 0.82

The original expression data was collated from the NCBI GEO database. For further information about this dataset please refer to the NCBI GEO dataset GDS596.

 0.027
Orthology
OrganismSNRPG OrthologueSNRPA1 OrthologueExperiment
AccessionInparalog ScoreAccessionInparalog Score
bakers yeast YFL017W-A 1 YPL213W 1
  • Other
  • AffinityCaptureMS

Get References From PubMed
worm Q9N4G9 1 Q9BLB6 1
fly Q9VXE0 1 Q9V4Q8 1

The Inparalog Score is calculated by InParanoid

The experiment type Other refers to techniques other than Y2H, MS, Immunoprecipitation, SurfacePlasmonResonance, XrayDiffraction, Xlinking, CompetitionBinding, Immunofluorescence, GelRetardationAssay, AffinityChromatography, InVitroBinding, InVitro, InVivo, FarWestern, pullDown, AffinityCaptureMS, EpistaticMiniArrayProfile, AffinityCaptureWestern, BiochemicalActivity, CoCrystalStructure, FRET, ReconstitutedComplex, CoLocalization, CoPurification or CoFractionation.

 0.593
Domains No domains were used in calculating likelihood of interaction 1.48E-3
Post-translational Modifications No PTMs were used in calculating likelihood of interaction
Localisation

Protein: SNRPG

LocalisationReference
Nucleus HPRD
Cytoplasm HPRD

Protein: SNRPA1

LocalisationReference
Nucleus HPRD
Nucleolus HPRD
Transitive Score

The common interactors between SNRPG and SNRPA1 that are considered by the Transitive module are listed below.

The Scores listed are the values used by the transitive module to calculate the final interaction Score between SNRPG andSNRPA1. The values listed are therefore not the final Score value for the listed interactions.

With a Score value ≥0.025 , SNRPG has 256 interactors and SNRPA1 has 172 interactors of which there are 37 common interactors.

Common InteractorName of Common InteractorScore for SNRPG-Interactor (?)Score for SNRPA1-Interactor (?)
SNRPD1 SNRPD1: Small nuclear ribonucleoprotein Sm D1 2.07E3 3.89
SNRPD3 SNRPD3: Small nuclear ribonucleoprotein Sm D3 2.07E3 3.89
SNRPD2 SNRPD2, SNRPD1: Small nuclear ribonucleoprotein Sm D2 691.00 3.89
KIAA0788 ASCC3L1, HELIC2, KIAA0788: U5 small nuclear ribonucleoprotein 200 kDa helicase 32.60 3.89
PRP19 PRPF19, NMP200, PRP19, SNEV: Pre-mRNA-processing factor 19 25.60 1.01
PLRG1 PLRG1: Pleiotropic regulator 1 6.33 0.354
SF3B3 N/A 3.89 3.89
SNRPF SNRPF, PBSCF: Small nuclear ribonucleoprotein F 2.60 3.89
SF3A3 SF3A3, SAP61: Splicing factor 3A subunit 3 1.84 1.84
PRPF8 PRPF8, PRPC8: Pre-mRNA-processing-splicing factor 8 1.84 3.05
SF3B1 SF3B1, SAP155: Splicing factor 3B subunit 1 0.890 3.99
SF3B2 SF3B2, SAP145: Splicing factor 3B subunit 2 0.593 0.593
SF3A1 SF3A1, SAP114: Splicing factor 3 subunit 1 0.412 2.79
PLK1 PLK1, PLK: Serine/threonine-protein kinase PLK1 0.354 0.354
SNRPEL1 RP11-390F4.1-001: Small nuclear ribonucleoprotein polypeptide E-like protein 1. 0.354 0.354
NULL N/A 0.119 0.119
LOC645472 hCG_23490: Uncharacterized protein ENSP00000329276 0.119 0.119
SERBP1 N/A 0.082 0.027
PTGES3 PTGES3, P23, TEBP: Prostaglandin E synthase 3 0.082 0.027
LRBA LRBA, BGL, CDC4L, LBA: Lipopolysaccharide-responsive and beige-like anchor prote 0.074 0.038
IFIH1 IFIH1, MDA5, RH116: Interferon-induced helicase C domain-containing protein 1 0.074 0.074
BTAF1 BTAF1, TAF172: TATA-binding protein-associated factor 172 0.074 0.053
LOC119358 similar to small nuclear ribonucleoprotein D2 0.071 0.071
PLK3 PLK3, CNK, FNK, PRK: Serine/threonine-protein kinase PLK3 0.065 0.082
PLK2 PLK2, SNK: Serine/threonine-protein kinase PLK2 0.053 0.047
DDX58 DDX58: Probable ATP-dependent RNA helicase DDX58 0.028 0.044
RTCD1 RTCD1, RPC, RPC1, RTC1: RNA 3'-terminal phosphate cyclase 0.027 0.027
PTD004 N/A 0.027 0.027
NOL7 NOL7, C6orf90, NOP27: Nucleolar protein 7 0.027 0.027
ILF2 ILF2, NF45, PRO3063: Interleukin enhancer-binding factor 2 0.027 0.027
HNRPD N/A 0.027 0.027
NOLC1 NOLC1, KIAA0035: Nucleolar phosphoprotein p130 0.027 0.027
BUB3 N/A 0.027 0.027
DKFZP586L0724 NOL11, L14: Nucleolar protein 11 0.027 0.027
CEP57 CEP57, KIAA0092, TSP57: Centrosomal protein of 57 kDa 0.027 0.027
TPRKB TPRKB, CGI-121, My019: TP53RK-binding protein 0.027 0.027
KARS KARS, KIAA0070: Lysyl-tRNA synthetase 0.027 0.027
2.15E-3
Total Score 3.36