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Evidence of Interaction Between SNRPG and LSM1

The interaction score between SNRPG and LSM1 is 1.05.

This page provides the details about the evidence that was used to calculate the interaction Score between the two proteins

The Scores that are listed with each module are based on the interaction score where that module provides the only source of evidence. The final Score is the integration of all the sources of evidence.

FeatureEvidenceScore (?)
Gene Expression

Pearson's Correlation between SNRPG and LSM1 = 0.71

The original expression data was collated from the NCBI GEO database. For further information about this dataset please refer to the NCBI GEO dataset GDS596.

 0.013
Orthology
OrganismSNRPG OrthologueLSM1 OrthologueExperiment
AccessionInparalog ScoreAccessionInparalog Score
bakers yeast YFL017W-A 1 YJL124C 1
worm Q9N4G9 1 Q20229 1
fly Q9VXE0 1 Q9W2K2 1

The Inparalog Score is calculated by InParanoid

The experiment type Other refers to techniques other than Y2H, MS, Immunoprecipitation, SurfacePlasmonResonance, XrayDiffraction, Xlinking, CompetitionBinding, Immunofluorescence, GelRetardationAssay, AffinityChromatography, InVitroBinding, InVitro, InVivo, FarWestern, pullDown, AffinityCaptureMS, EpistaticMiniArrayProfile, AffinityCaptureWestern, BiochemicalActivity, CoCrystalStructure, FRET, ReconstitutedComplex, CoLocalization, CoPurification or CoFractionation.

 2.23E-3
Domains Domains present in SNRPG and LSM1:
Domains in SNRPGDomains in LSM1
IPR001163 Small nuclear ribonucleoprotein (Sm protein)
IPR010920 Small nuclear-like ribonucleoprotein
IPR006649 snRNP domain
IPR001163 Small nuclear ribonucleoprotein (Sm protein)
IPR010920 Small nuclear-like ribonucleoprotein
IPR006649 snRNP domain

The Chi square scores for co-occurrence of domains that are present in SNRPG and LSM1 are listed below.

Domain 1Domain 2Chi Square
IPR001163 Small nuclear ribonucleoprotein (Sm protein) IPR006649 snRNP domain 1325.87
IPR001163 Small nuclear ribonucleoprotein (Sm protein) IPR001163 Small nuclear ribonucleoprotein (Sm protein) 1297.61
IPR006649 snRNP domain IPR006649 snRNP domain 1206.57
IPR010920 Small nuclear-like ribonucleoprotein IPR006649 snRNP domain 1168.89
IPR001163 Small nuclear ribonucleoprotein (Sm protein) IPR010920 Small nuclear-like ribonucleoprotein 1143.95
IPR010920 Small nuclear-like ribonucleoprotein IPR010920 Small nuclear-like ribonucleoprotein 355.236

The background colour of the table refers to:

  • Blue Domain is only present in SNRPG
  • Yellow Domain is only present in LSM1
  • Green Domain is present in both SNRPG and LSM1

 0.265
Post-translational Modifications No PTMs were used in calculating likelihood of interaction
Localisation

Protein: SNRPG

LocalisationReference
Nucleus HPRD
Cytoplasm HPRD

Protein: LSM1

LocalisationReference
Nucleus HPRD
Cytoplasm HPRD
Transitive Score

The common interactors between SNRPG and LSM1 that are considered by the Transitive module are listed below.

The Scores listed are the values used by the transitive module to calculate the final interaction Score between SNRPG andLSM1. The values listed are therefore not the final Score value for the listed interactions.

With a Score value ≥0.025 , SNRPG has 256 interactors and LSM1 has 222 interactors of which there are 181 common interactors.

Common InteractorName of Common InteractorScore for SNRPG-Interactor (?)Score for LSM1-Interactor (?)
SNRPD1 SNRPD1: Small nuclear ribonucleoprotein Sm D1 2.07E3 0.596
SNRPD3 SNRPD3: Small nuclear ribonucleoprotein Sm D3 2.07E3 1.22
SNRPD2 SNRPD2, SNRPD1: Small nuclear ribonucleoprotein Sm D2 691.00 0.739
LSM5 LSM5: U6 snRNA-associated Sm-like protein LSm5 691.00 195.00
LSM4 LSM4: U6 snRNA-associated Sm-like protein LSm4 691.00 803.00
PRPF4 PRPF4, PRP4: U4/U6 small nuclear ribonucleoprotein Prp4 69.60 0.074
KIAA0788 ASCC3L1, HELIC2, KIAA0788: U5 small nuclear ribonucleoprotein 200 kDa helicase 32.60 0.074
PRP19 PRPF19, NMP200, PRP19, SNEV: Pre-mRNA-processing factor 19 25.60 15.50
SNRPE SNRPE: Small nuclear ribonucleoprotein E 8.73 0.824
SNRPB SNRPB, COD, SNRPB1: Small nuclear ribonucleoprotein-associated proteins B and B' 2.91 0.824
LSM3 LSM3, MDS017: U6 snRNA-associated Sm-like protein LSm3 2.60 323.00
LSM7 LSM7: U6 snRNA-associated Sm-like protein LSm7 2.60 195.00
LSM8 LSM8: U6 snRNA-associated Sm-like protein LSm8 2.60 0.739
SNRPF SNRPF, PBSCF: Small nuclear ribonucleoprotein F 2.60 0.596
LSM2 LSM2, C6orf28, G7b: U6 snRNA-associated Sm-like protein LSm2 1.22 592.00
LSM6 LSM6: U6 snRNA-associated Sm-like protein LSm6 1.22 158.00
NUP37 NUP37: Nucleoporin Nup37 0.789 0.074
DDX21 DDX21: Nucleolar RNA helicase 2 0.293 0.067
DHX15 DHX15, DBP1, DDX15: Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.293 0.083
RBBP4 RBBP4, RBAP48: Histone-binding protein RBBP4 0.263 0.074
NUP43 N/A 0.263 0.060
CDC20 CDC20: Cell division cycle protein 20 homolog 0.263 0.044
EIF4A1 EIF4A1, DDX2A, EIF4A: Eukaryotic initiation factor 4A-I 0.263 0.074
BAT1 N/A 0.263 0.074
DDX1 DDX1: ATP-dependent RNA helicase DDX1 0.263 0.074
BOP1 BOP1, KIAA0124: Ribosome biogenesis protein BOP1 0.263 0.044
SMARCA5 SMARCA5, SNF2H, WCRF135: SWI/SNF-related matrix-associated actin-dependent regul 0.263 0.060
LSM10 LSM10: U7 snRNA-associated Sm-like protein LSm10 0.237 0.237
LSM11 LSM11: U7 snRNA-associated Sm-like protein LSm11 0.237 0.237
SNRPN HCERN3, SNRPN, SMN: Small nuclear ribonucleoprotein-associated protein N 0.158 0.156
SEC13L1 SEC13, D3S1231E, SEC13L1, SEC13R: Protein SEC13 homolog 0.137 0.137
WDR41 N/A 0.137 0.067
GNB2L1 Lung cancer oncogene 7 0.137 0.083
CHD4 CHD4: Chromodomain-helicase-DNA-binding protein 4 0.137 0.083
DDX50 DDX50: ATP-dependent RNA helicase DDX50 0.137 0.083
DDX46 DDX46, KIAA0801: Probable ATP-dependent RNA helicase DDX46 0.137 0.083
GTF3C2 GTF3C2, KIAA0011: General transcription factor 3C polypeptide 2 0.137 0.067
CGI-48 UTP18, WDR50, CDABP0061, CGI-48: U3 small nucleolar RNA-associated protein 18 ho 0.123 0.060
CDC40 CDC40, EHB3, PRP17, PRPF17: Pre-mRNA-processing factor 17 0.123 0.074
EIF3S2 EIF3S2, TRIP1: Eukaryotic translation initiation factor 3 subunit 2 0.123 0.074
IEF-SSP-9502 PWP1: Periodic tryptophan protein 1 homolog 0.123 0.074
SND1 SND1, TDRD11: Staphylococcal nuclease domain-containing protein 1 0.123 0.074
ASCC3 ASCC3, HELIC1: Activating signal cointegrator 1 complex subunit 3 0.123 0.060
POLD1 POLD1, POLD: DNA polymerase delta catalytic subunit 0.123 0.036
TAF5 TAF5, TAF2D: Transcription initiation factor TFIID subunit 5 0.123 0.060
DDX19A DDX19A, DDX19L: ATP-dependent RNA helicase DDX19A 0.123 0.074
WDR3 WDR3: WD repeat-containing protein 3 0.123 0.044
DDX49 DDX49: Probable ATP-dependent RNA helicase DDX49 0.123 0.074
RBBP7 RBBP7, RBAP46: Histone-binding protein RBBP7 0.123 0.060
WDR77 WDR77, HKMT1069, hCG_39991: Androgen receptor cofactor p44 0.123 0.044
WDR12 WDR12: WD repeat-containing protein 12 0.123 0.044
DDX18 DDX18: ATP-dependent RNA helicase DDX18 0.123 0.074
STRAP STRAP, MAWD, UNRIP: Serine-threonine kinase receptor-associated protein 0.123 0.074
WDR68 WDR68, HAN11: WD repeat-containing protein 68 0.123 0.060
WDR57 WDR57, PRP8BP, SFP38: WD repeat-containing protein 57 0.123 0.060
DDX23 DDX23: Probable ATP-dependent RNA helicase DDX23 0.123 0.074
CNOT7 CNOT7, CAF1: CCR4-NOT transcription complex subunit 7 0.123 0.074
RNU3IP2 RRP9, RNU3IP2, U355K: U3 small nucleolar RNA-interacting protein 2 0.123 0.036
CHAF1B CHAF1B, CAF1A, CAF1P60, MPHOSPH7, MPP7: Chromatin assembly factor 1 subunit B 0.123 0.036
RAD54L RAD54L, RAD54A: DNA repair and recombination protein RAD54-like 0.123 0.036
WDR18 N/A 0.123 0.044
PAK1IP1 PAK1IP1, PIP1, WDR84: p21-activated protein kinase-interacting protein 1 0.123 0.060
DDX47 E4-DBP: DEAD box protein 0.123 0.074
DDX39 DDX39: ATP-dependent RNA helicase DDX39 0.123 0.060
PPP2R2A PPP2R2A: Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alp 0.123 0.074
CSTF1 CSTF1: Cleavage stimulation factor 50 kDa subunit 0.123 0.060
NUTF2 NUTF2, NTF2: Nuclear transport factor 2 0.0968 0.035
SMARCAL1 SMARCAL1, HARP: SWI/SNF-related matrix-associated actin-dependent regulator of c 0.083 0.083
RAD54B RAD54B: DNA repair and recombination protein RAD54B 0.083 0.0308
SMARCA4 SMARCA4, BRG1, SNF2B, SNF2L4: Probable global transcription activator SNF2L4 0.083 0.050
DDB2 DDB2: DNA damage-binding protein 2 0.083 0.0308
FBXW2 FBXW2, FBW2, FWD2: F-box/WD repeat-containing protein 2 0.083 0.083
CORO1C CORO1C, CRNN4: Coronin-1C 0.074 0.060
RECQL RECQL, RECQL1: ATP-dependent DNA helicase Q1 0.074 0.074
FLJ10439 WDR74, NSA1: WD repeat-containing protein 74 0.074 0.044
SEC31L1 N/A 0.074 0.074
DDX3X DDX3X, DBX, DDX3: ATP-dependent RNA helicase DDX3X 0.074 0.074
LRBA LRBA, BGL, CDC4L, LBA: Lipopolysaccharide-responsive and beige-like anchor prote 0.074 0.036
DDX54 DDX54: ATP-dependent RNA helicase DDX54 0.074 0.044
IFIH1 IFIH1, MDA5, RH116: Interferon-induced helicase C domain-containing protein 1 0.074 0.036
BTAF1 BTAF1, TAF172: TATA-binding protein-associated factor 172 0.074 0.060
POLE POLE, POLE1: DNA polymerase epsilon catalytic subunit A 0.074 0.036
HELLS HELLS, PASG, Nbla10143, SMARCA6: Lymphoid-specific helicase 0.074 0.028
POLA POLA1, POLA: DNA polymerase alpha catalytic subunit 0.074 0.028
COPB2 COPB2: Coatomer subunit beta' 0.074 0.060
COPA COPA: Coatomer subunit alpha 0.074 0.074
TSSC1 TSSC1: Protein TSSC1 0.074 0.060
DDX48 EIF4A3, DDX48, KIAA0111: Eukaryotic initiation factor 4A-III 0.074 0.060
DDX41 DDX41, ABS: Probable ATP-dependent RNA helicase DDX41 0.074 0.074
BLM BLM, RECQ2, RECQL3: Bloom syndrome protein 0.074 0.036
DDX10 DDX10: Probable ATP-dependent RNA helicase DDX10 0.074 0.036
WRN WRN, RECQ3, RECQL2: Werner syndrome ATP-dependent helicase 0.074 0.044
PWP2H PWP2, PWP2H: Periodic tryptophan protein 2 homolog 0.074 0.044
KIAA0052 SKIV2L2, KIAA0052: Superkiller viralicidic activity 2-like 2 0.074 0.036
DDX27 DDX27, RHLP, HSPC259, PP3241: Probable ATP-dependent RNA helicase DDX27 0.074 0.074
WDR8 WDR8: WD repeat-containing protein 8 0.067 0.050
WDR1 N/A 0.067 0.083
PIK3R4 PIK3R4: Phosphoinositide 3-kinase regulatory subunit 4 0.060 0.060
JMJD2C JMJD2C, GASC1, JHDM3C, KIAA0780: JmjC domain-containing histone demethylation pr 0.060 0.044
WDHD1 WDHD1, AND1: WD repeat and HMG-box DNA-binding protein 1 0.060 0.028
CORO7 CORO7: Coronin-7 0.060 0.060
DDX28 DDX28, MDDX28: Probable ATP-dependent RNA helicase DDX28 0.060 0.044
REXO2 REXO2, SFN, CGI-114, SMFN: Oligoribonuclease, mitochondrial precursor 0.060 0.044
WDR39 CIAO1, WDR39: Protein CIAO1 0.060 0.060
AAMP AAMP: Angio-associated migratory cell protein 0.060 0.044
GRWD1 GRWD1, GRWD, WDR28: Glutamate-rich WD repeat-containing protein 1 0.060 0.036
DHX35 C20orf15, DHX35, DDX35: Probable ATP-dependent RNA helicase DHX35 0.060 0.044
RECQL4 RECQL4, RECQ4: ATP-dependent DNA helicase Q4 0.060 0.036
WDR26 WDR26, CDW2, PRO0852, MIP2: WD repeat-containing protein 26 0.060 0.060
AAAS AAAS, ADRACALA, GL003: Aladin 0.060 0.044
CNOT8 CNOT8, CALIF, POP2: CCR4-NOT transcription complex subunit 8 0.060 0.074
DHX38 DHX38, DDX38, KIAA0224, PRP16: Pre-mRNA-splicing factor ATP-dependent RNA helica 0.060 0.060
XPMC2H REXO4, PMC2, XPMC2H: RNA exonuclease 4 0.060 0.060
WIPI2 WIPI2, CGI-50: WD repeat domain phosphoinositide-interacting protein 2 0.060 0.060
DHX16 DHX16, DBP2, DDX16, KIAA0577: Putative pre-mRNA-splicing factor ATP-dependent RN 0.060 0.060
DDX17 DDX17: Probable ATP-dependent RNA helicase DDX17 0.060 0.060
ISG20 ISG20, HEM45: Interferon-stimulated gene 20 kDa protein 0.050 0.041
GNB1L GNB1L, GY2, FKSG1, KIAA1645, WDR14: Guanine nucleotide-binding protein subunit b 0.050 0.041
THRAP5 MED16, DRIP92, THRAP5: Mediator of RNA polymerase II transcription subunit 16 0.044 0.044
DICER1 DICER1, DICER, HERNA, KIAA0928: Endoribonuclease Dicer 0.044 0.044
ERCC3 ERCC3, XPB, XPBC: TFIIH basal transcription factor complex helicase XPB subunit 0.044 0.044
NBEAL2 N/A 0.044 0.028
SKIV2L SKIV2L, XXbac-BCX116I9.5-001, XXbac-BPG116M5.1-001: Superkiller viralicidic acti 0.044 0.036
RAE1 RAE1, MRNP41: mRNA export factor 0.044 0.044
CORO1A CORO1A, CORO1: Coronin-1A 0.044 0.060
LGP2 DHX58, D11LGP2E, LGP2: Probable ATP-dependent RNA helicase DHX58 0.044 0.036
ARPC1B ARC41, ARPC1B: Actin-related protein 2/3 complex subunit 1B 0.044 0.060
PARN PARN, DAN: Poly(A)-specific ribonuclease PARN 0.044 0.028
GNB1 GNB1: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 0.044 0.074
WDR67 WDR67: WD repeat-containing protein 67 0.044 0.044
EML3 EML3: Echinoderm microtubule-associated protein-like 3 0.044 0.044
GNB2 GNB2: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 0.044 0.060
ARPC1A ARPC1A, SOP2L: Actin-related protein 2/3 complex subunit 1A 0.044 0.044
DDX5 DDX5, G17P1, HELR, HLR1: Probable ATP-dependent RNA helicase DDX5 0.044 0.074
HIRA HIRA, DGCR1, HIR, TUPLE1: Protein HIRA 0.044 0.060
SMARCA3 HLTF, HIP116A, RNF80, SMARCA3, SNF2L3, ZBU1: Helicase-like transcription factor 0.044 0.036
REV3L REV3L, POLZ, REV3: DNA polymerase zeta catalytic subunit 0.041 0.041
WDR13 WDR13: WD repeat-containing protein 13 0.041 0.041
PHF20 PHF20, C20orf104, GLEA2, HCA58, NZF, TZP: PHD finger protein 20 0.039 0.053
WDR48 WDR48, KIAA1449: WD repeat-containing protein 48 0.036 0.036
WDR45L N/A 0.036 0.044
WDR42A N/A 0.036 0.036
SETDB1 SETDB1, KIAA0067: Histone-lysine N-methyltransferase SETDB1 0.036 0.036
BCDO2 PTS: 6-pyruvoyl tetrahydrobiopterin synthase 0.036 0.044
DDX24 DDX24: ATP-dependent RNA helicase DDX24 0.036 0.044
DDX3Y DDX3Y, DBY: ATP-dependent RNA helicase DDX3Y 0.036 0.036
WIPI1 WIPI1, WIPI49: WD repeat domain phosphoinositide-interacting protein 1 0.036 0.044
DDX56 DDX56, DDX21, NOH61: Probable ATP-dependent RNA helicase DDX56 0.036 0.028
LBR LBR: Lamin-B receptor 0.0331 0.027
RNASEH1 RNASEH1, RNH1: Ribonuclease H1 0.0331 0.0331
POLG POLG, MDP1, POLG1, POLGA: DNA polymerase subunit gamma-1 0.0331 0.027
NUP214 N/A 0.0308 0.041
PEX7 PEX7, PTS2R: Peroxisomal targeting signal 2 receptor 0.028 0.028
WDR37 N/A 0.028 0.060
DYNC1I2 N/A 0.028 0.036
CETN2 CETN2, CALT, CEN2: Centrin-2 0.028 0.044
KATNB1 KATNB1: Katanin p80 WD40-containing subunit B1 0.028 0.028
DDX58 DDX58: Probable ATP-dependent RNA helicase DDX58 0.028 0.036
WDR17 N/A 0.027 0.027
PHF1 N/A 0.027 0.027
WSB1 WSB1, SWIP1: WD repeat and SOCS box-containing protein 1 0.027 0.027
TDRD4 TDRD4: Tudor domain-containing protein 4 0.027 0.027
FBXW8 FBXW8, FBW6, FBW8, FBX29, FBXO29, FBXW6: F-box/WD repeat-containing protein 8 0.027 0.027
KIF21A N/A 0.027 0.027
SMARCAD1 SMARCAD1, KIAA1122: SWI/SNF-related matrix-associated actin-dependent regulator 0.027 0.027
WDR53 N/A 0.027 0.027
TLE6 TLE6: Transducin-like enhancer protein 6 0.027 0.027
BRWD1 N/A 0.027 0.027
TAF5L TAF5L, PAF65B: TAF5-like RNA polymerase II p300/CBP-associated factor-associated 0.027 0.027
DDX53 DDX53, CAGE: Probable ATP-dependent RNA helicase DDX53 0.027 0.027
TLE3 TLE3, KIAA1547: Transducin-like enhancer protein 3 0.027 0.027
NEDD1 N/A 0.027 0.027
WDR34 N/A 0.027 0.027
WDR54 N/A 0.027 0.027
TREX1 TREX1: Three prime repair exonuclease 1 0.027 0.027
WDR72 N/A 0.027 0.027
ERCC8 ERCC8, CKN1, CSA: DNA excision repair protein ERCC-8 0.027 0.027
REXO1L1 REXO1L1, GOR: Exonuclease GOR 0.027 0.027
RFWD2 RFWD2, COP1, RNF200: E3 ubiquitin-protein ligase RFWD2 0.027 0.027
FLJ12671 ISG20L2, HSD38, HSD-38: Interferon-stimulated 20 kDa exonuclease-like 2 0.027 0.027
SNRPB N/A 0.0258 0.0258
2.15E-3
Total Score 1.05