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Evidence of Interaction Between SNRPG and SF3A3

The interaction score between SNRPG and SF3A3 is 1.6.

This page provides the details about the evidence that was used to calculate the interaction Score between the two proteins

The Scores that are listed with each module are based on the interaction score where that module provides the only source of evidence. The final Score is the integration of all the sources of evidence.

FeatureEvidenceScore (?)
Gene Expression

Pearson's Correlation between SNRPG and SF3A3 = 0.70

The original expression data was collated from the NCBI GEO database. For further information about this dataset please refer to the NCBI GEO dataset GDS596.

 7.78E-3
Orthology
OrganismSNRPG OrthologueSF3A3 OrthologueExperiment
AccessionInparalog ScoreAccessionInparalog Score
bakers yeast YFL017W-A 1 YDL030W 1
  • Other
  • AffinityCaptureMS

Get References From PubMed
worm Q9N4G9 1 Q22469 1
fly Q9VXE0 1 O46106 1

The Inparalog Score is calculated by InParanoid

The experiment type Other refers to techniques other than Y2H, MS, Immunoprecipitation, SurfacePlasmonResonance, XrayDiffraction, Xlinking, CompetitionBinding, Immunofluorescence, GelRetardationAssay, AffinityChromatography, InVitroBinding, InVitro, InVivo, FarWestern, pullDown, AffinityCaptureMS, EpistaticMiniArrayProfile, AffinityCaptureWestern, BiochemicalActivity, CoCrystalStructure, FRET, ReconstitutedComplex, CoLocalization, CoPurification or CoFractionation.

 0.593
Domains No domains were used in calculating likelihood of interaction N/A
Post-translational Modifications No PTMs were used in calculating likelihood of interaction
Localisation No localisation data was used in calculating likelihood of interaction
Transitive Score

The common interactors between SNRPG and SF3A3 that are considered by the Transitive module are listed below.

The Scores listed are the values used by the transitive module to calculate the final interaction Score between SNRPG andSF3A3. The values listed are therefore not the final Score value for the listed interactions.

With a Score value ≥0.025 , SNRPG has 256 interactors and SF3A3 has 261 interactors of which there are 42 common interactors.

Common InteractorName of Common InteractorScore for SNRPG-Interactor (?)Score for SF3A3-Interactor (?)
SNRPD1 SNRPD1: Small nuclear ribonucleoprotein Sm D1 2.07E3 5.94
SNRPD3 SNRPD3: Small nuclear ribonucleoprotein Sm D3 2.07E3 3.59
LSM4 LSM4: U6 snRNA-associated Sm-like protein LSm4 691.00 1.49
KIAA0788 ASCC3L1, HELIC2, KIAA0788: U5 small nuclear ribonucleoprotein 200 kDa helicase 32.60 26.80
PRP19 PRPF19, NMP200, PRP19, SNEV: Pre-mRNA-processing factor 19 25.60 1.84
SNRPA1 SNRPA1: U2 small nuclear ribonucleoprotein A' 3.89 1.84
SF3B3 N/A 3.89 3.05
SNRPF SNRPF, PBSCF: Small nuclear ribonucleoprotein F 2.60 1.49
SF3A2 SF3A2, SAP62: Splicing factor 3A subunit 2 1.84 1.79
PRPF8 PRPF8, PRPC8: Pre-mRNA-processing-splicing factor 8 1.84 1.49
SNRP70 SNRP70, RNPU1Z, RPU1, U1AP1: U1 small nuclear ribonucleoprotein 70 kDa 0.657 0.086
SF3B2 SF3B2, SAP145: Splicing factor 3B subunit 2 0.593 0.08
SF3A1 SF3A1, SAP114: Splicing factor 3 subunit 1 0.412 193.00
PLK1 PLK1, PLK: Serine/threonine-protein kinase PLK1 0.354 1.15
SNRPEL1 RP11-390F4.1-001: Small nuclear ribonucleoprotein polypeptide E-like protein 1. 0.354 0.593
DDX21 DDX21: Nucleolar RNA helicase 2 0.293 0.068
SMARCA5 SMARCA5, SNF2H, WCRF135: SWI/SNF-related matrix-associated actin-dependent regul 0.263 0.061
DDX46 DDX46, KIAA0801: Probable ATP-dependent RNA helicase DDX46 0.137 0.068
LOC652595 RP11-395L14.12-001: OTTHUMP00000045488 0.119 0.119
NULL N/A 0.119 0.119
LOC645472 hCG_23490: Uncharacterized protein ENSP00000329276 0.119 0.119
SMARCA4 SMARCA4, BRG1, SNF2B, SNF2L4: Probable global transcription activator SNF2L4 0.083 0.055
PTGES3 PTGES3, P23, TEBP: Prostaglandin E synthase 3 0.082 0.025
DDX3X DDX3X, DBX, DDX3: ATP-dependent RNA helicase DDX3X 0.074 0.049
BTAF1 BTAF1, TAF172: TATA-binding protein-associated factor 172 0.074 0.061
DDX41 DDX41, ABS: Probable ATP-dependent RNA helicase DDX41 0.074 0.049
BLM BLM, RECQ2, RECQL3: Bloom syndrome protein 0.074 0.049
WRN WRN, RECQ3, RECQL2: Werner syndrome ATP-dependent helicase 0.074 0.061
PLK3 PLK3, CNK, FNK, PRK: Serine/threonine-protein kinase PLK3 0.065 0.138
WDHD1 WDHD1, AND1: WD repeat and HMG-box DNA-binding protein 1 0.060 0.036
WDR39 CIAO1, WDR39: Protein CIAO1 0.060 1.49
DHX16 DHX16, DBP2, DDX16, KIAA0577: Putative pre-mRNA-splicing factor ATP-dependent RN 0.060 0.049
PLK2 PLK2, SNK: Serine/threonine-protein kinase PLK2 0.053 0.078
DICER1 DICER1, DICER, HERNA, KIAA0928: Endoribonuclease Dicer 0.044 0.049
ERCC3 ERCC3, XPB, XPBC: TFIIH basal transcription factor complex helicase XPB subunit 0.044 0.049
SKIV2L SKIV2L, XXbac-BCX116I9.5-001, XXbac-BPG116M5.1-001: Superkiller viralicidic acti 0.044 0.049
DDX5 DDX5, G17P1, HELR, HLR1: Probable ATP-dependent RNA helicase DDX5 0.044 0.049
SMARCA3 HLTF, HIP116A, RNF80, SMARCA3, SNF2L3, ZBU1: Helicase-like transcription factor 0.044 0.036
SSRP1 SSRP1, FACT80: FACT complex subunit SSRP1 0.044 0.061
DDX24 DDX24: ATP-dependent RNA helicase DDX24 0.036 0.030
DDX3Y DDX3Y, DBY: ATP-dependent RNA helicase DDX3Y 0.036 0.036
DKFZP586L0724 NOL11, L14: Nucleolar protein 11 0.027 0.027
2.15E-3
Total Score 1.6